Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1628 ATGCCTTGTACCAAAACACTCTTCTTCTCCTTCTTCTTCTTCGTTCTATCTTCCTCTGCCCTCTCCACAGCCTCTTCCACCATCAACTTGCTCCTCCCATCCGACGCCGTTTCATTGCTCTCTTTCAAATCCAAAGCTGACCAAGACAACAAGCTCCTCTACGCCCTCAACGAGCGCTACGATTACTGTCAATGGCAAGGCGTCAAATGCGCCCAAGGCAGAGTGGTTCGCTTCGTTCTTCAGAACTTTGGCCTCCGTGGCATCTTCCCTCCCAACACCTTGACTCGCCTTGACCAGCTCCGACTCCTCAATCTCCGCAACAACTCCCTCTTCGGTCCCATCCCCGACCTCTCTTCCCTCTTCAATCTCAAGTCTCTCTTCCTCGACCACAATTCCTTCTCCGGTTCTTTCCCTCCATCCATTCTCTCCCTTCACCGCCTTCTTACTCTTTCTCTTTCCCATAACAATCTCACCGGTTCAATCCCCGCTGAATTAACTGTTCTGGACCGCCTCATTTCTCTCCGCCTTGATTCCAACTGGTTTAATGGAACCGTTCCGCCGCTGAACCAGACCTCCCTTCGAATCTTTAACGTGTCCGGCAACAACCTGACTGGGCCAGTTCCGGTAACACCTACCCTCGGTCGCTTTGACGCGGCGTCGTTTTTGGGGAATCCAGGTCTATGCGGGGAGATCATCCACAAAGCATGTGATTCTCACTCTCCATTCTTCGGTTCCTCCAATGCCACTGCGTCCTCGTCACCACTGGGGCAGAGCGCGGAATCACAGGGCATCTTAGTGGTTCCTTCTCCTTCCCCCACTAAAAAGAAGCATAAAAGCACGACTTTGATTCTTGGATTCACCATCGGGTTGTCGGTTCTCATTGCGTCTACTCTGTGCGTTATCGCATTGGTTAGGAAACAGAGCTGTTCAAGAGAAGCAGAGAGCCCAAAAATAGAGTCTTTGGAAACCAAAAATGAACCGCCGGCATCTTTAGTTGCGGAAACACAAGTAGGGCAAAATAGCGAATCGAATGAGAAGGCAAAGAAGATAGAGGAAATCAAGCATGCTCATAAGAGTGGGAATTTGGTGTTCTGTAGTGGGGAAATGCAAGTGTATACAATAGAACAGTTAATGAGAGCTTCGGCTGAGTTGCTGGGAAGGGGTAGCATAGGAACAACGTACAAGGCGGTGCTGGACGGTCAGCTCATAATGACGGTGAAGAGGGTGGATGCTGGTAAGACTGCAGTAACGAGCAGCCAAGCATTCGAGCAGCACATGCAAATATTGGGTGAGCTTCGGCATCCGAATTTGGTACCGGTTAGAGCTTATTTTCAGGCGAAGGGAGAAAGGCTCGTGATCTATGATTATCAACCTAATGGCAGCCTCTTCAACCTTATTCATGGTTCAAGATCAACAAGAGCGAAGCCTCTCCACTGGACATCATGCTTGAAGATAGCTGAAGATGTAGCCCATGGACTTCTTTATATACATCAAGCCTCAAGTTTAGTCCATGGCAACCTAAAGTCTTCTAATGTCCTTCTTGGAGCGGACTTTGAAGCTTGTCTTACAGACTATAGTTTGGCCCTCCTTGCAGACGTCTCATCCACTGAAGACCCTGATTCTGCAGCTTATAAAGCACCAGAGACTCGCAAGTCTAGCCGCCGAGCCATTCCCAAGTCTGATGTATACGCCTTTGGGGTGCTTTTACTGGAGCTTCTGACGGGTAAACATCCTTCTCAACATCCGTTCCTTGTTCCCACCGATTTGCAAGATTGGGTAAGAGCAATGAGGGATGATGATGGTGCTGAAGATAATCAGCTAGGAATGCTCACGGAGGTTGCCAGTATTTGCAGTGCCACTTCACCTGAGCAGAGACCAGTGATGTGGCAAGTCTTGAAGATGATACAGGAAATAAAGGAGAGGGCTGGCTTTTCATAG 1938 0.4912 MPCTKTLFFSFFFFVLSSSALSTASSTINLLLPSDAVSLLSFKSKADQDNKLLYALNERYDYCQWQGVKCAQGRVVRFVLQNFGLRGIFPPNTLTRLDQLRLLNLRNNSLFGPIPDLSSLFNLKSLFLDHNSFSGSFPPSILSLHRLLTLSLSHNNLTGSIPAELTVLDRLISLRLDSNWFNGTVPPLNQTSLRIFNVSGNNLTGPVPVTPTLGRFDAASFLGNPGLCGEIIHKACDSHSPFFGSSNATASSSPLGQSAESQGILVVPSPSPTKKKHKSTTLILGFTIGLSVLIASTLCVIALVRKQSCSREAESPKIESLETKNEPPASLVAETQVGQNSESNEKAKKIEEIKHAHKSGNLVFCSGEMQVYTIEQLMRASAELLGRGSIGTTYKAVLDGQLIMTVKRVDAGKTAVTSSQAFEQHMQILGELRHPNLVPVRAYFQAKGERLVIYDYQPNGSLFNLIHGSRSTRAKPLHWTSCLKIAEDVAHGLLYIHQASSLVHGNLKSSNVLLGADFEACLTDYSLALLADVSSTEDPDSAAYKAPETRKSSRRAIPKSDVYAFGVLLLELLTGKHPSQHPFLVPTDLQDWVRAMRDDDGAEDNQLGMLTEVASICSATSPEQRPVMWQVLKMIQEIKERAGFS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1628 645 Pfam Protein kinase domain 382 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1628 645 MobiDBLite consensus disorder prediction 314 344 - -
Glsi05g1628 645 FunFam Probable inactive receptor kinase At5g67200 34 144 - -
Glsi05g1628 645 Gene3D Ribonuclease Inhibitor 33 189 IPR032675 -
Glsi05g1628 645 MobiDBLite consensus disorder prediction 329 343 - -
Glsi05g1628 645 Gene3D Transferase(Phosphotransferase) domain 1 458 643 - -
Glsi05g1628 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 640 IPR046959 -
Glsi05g1628 645 Gene3D Ribonuclease Inhibitor 190 236 IPR032675 -
Glsi05g1628 645 ProSiteProfiles Protein kinase domain profile. 379 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1628 645 FunFam Leucine-rich repeat receptor-like protein kinase 146 238 - -
Glsi05g1628 645 Gene3D Phosphorylase Kinase; domain 1 339 456 - -
Glsi05g1628 645 SUPERFAMILY Protein kinase-like (PK-like) 383 638 IPR011009 -
Glsi05g1628 645 SUPERFAMILY L domain-like 33 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1628 Glsi-ChrGlsi05 64589139 64591575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1628 18 639 Receptor kinase-like Gene Family AT3G50230 55.452 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi05g1628 Pkinase 8e-30 CL0016