Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1622 ATGGATGGTGCGGTAGGAGGAGGAAGGGAGAGAGAGATGGCCACGAGGAAGAGGGGGGTAGAGGGTGAGAGGAGATACAAAGGGATTAGGATGAGGAAGTGGGGTAAGTGGGTCGCTGAGATTCGGGAGCCCAATAAACGCTCTAGGATTTGGCTCGGTTCCTATTCCACGCCGGTTGCGGCGGCCCGGGCATACGACACGGCAGTTTTTTATCTCAGGGGACCATCGGCCCGCCTTAATTTCCCTGAGCTTCTAGTTGGAGAAGGGGGCGACGGCGGCGGCGACATGTCGGCTGCTTCCATTAGGAAGAAAGCCACGGAGGTTGGTGCCAGAGTGGATGCGCTTCAGGCGGCCCTCCACCATCCCCACCATGCCTCGGTGGCGCCCGAGCTCGGCGGTGGAGGCGCCGGGGAGTTTGTGGAGCGGGTTGATCTTAATAAGATACCCGAACCCGAGAATTCAGACTGTGACTGGGATATGAAGTAA 486 0.5864 MDGAVGGGREREMATRKRGVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLVGEGGDGGGDMSAASIRKKATEVGARVDALQAALHHPHHASVAPELGGGGAGEFVERVDLNKIPEPENSDCDWDMK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1622 161 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Glsi05g1622 161 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 155 - -
Glsi05g1622 161 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Glsi05g1622 161 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Glsi05g1622 161 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Glsi05g1622 161 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Glsi05g1622 161 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Glsi05g1622 161 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Glsi05g1622 161 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Glsi05g1622 161 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1622 Glsi-ChrGlsi05 64558927 64559412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1622 13 159 AP2-EREBP Transcription Factor Family AT2G23340 62.805 3.69e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi05g1622 AP2 1e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1622 05 64558927 64559412 Glsi09g0438 09 2978204 2978686 CCT
Glsi05g1622 05 64558927 64559412 Glsi05g1622 05 64558927 64559412 ECH