Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1620 ATGTGGGATCTCAATGACTCGCCCGATCGGAGAAAGGACGACGAATCCGAAGGCTGTTCTTCCCTCAAGACTTCCATCGACGGAGATGATGATAAAGGAAAGCGGGTCGGATCTGTCTCCAATTCAAGCTCTTCTGCGGTGGTAATCGAGGACGGATCGGAAGAAGACGAGGCTGAGAGGAGCAGAACTTTGAAGAAACGAAGCAGTAAGATATTTGGGTTCTGCGTAACCCATGAGGAGTCCATGGATAGTGATGGCCCCCCTGTGACCCGGCAGTTGTTCCCGGTCGAGGAGGCTGACATGGCCGTCTCGTCGGGTGGAGGCAGCTCGGCCTTCCCTCGGGCTCACTGGGTGGGTGTAAAATTCTGTCAACCAGAAGGAGTTGGTGCTGGAAAATCAGTGGAAGTGTCGCAGCCGATGAAAAAGAGTCGGCGAGGACCAAGGTCAAGGAGCTCTCAGTATAGAGGTGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATCAAGTTTCGGGGAGTGGAGGCGGACATAAACTTCAACATAGAAGACTATGAAGAAGACTTGAAGCAGATGACTAATCTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAGTATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTAGAATGGGTCAATTTTTAGGCAAAAAGTACGTTTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAATGGCAAAGAAGCTGTCACCAATTTTGATCCCAGCATCTATGAGCACGAGCTTAATTCTGAATCCTCGGGTAACGCTGCAGATCACAATCTGGATTTAAGTTTAGGCAATTCGAGCTCAAAGCACGGCAATAGTCAAGCATTAGGGAATGATACCCCAAATTCTGCAATTGATCAGCACATGCCATCTGAATCTAACTGGCGTAATGGAGGATTCAGGCCTAAGCTCCCCCTGCTGCCAGAACAAAATACTAGAAGCAGCACGGAAGAGCATGGAAGGGATGGGCAGGGCGAGGTTGAAGCCTGGCGGCTGTTAAGTCAAAGTCAGCTTCAACCTCCAGGCTCTAAAGAAATGCAAAGATATGGTCCCTACAAGGCATCTGGAGAGCCTCAAATGCTCCACAGTTTTGCTCCACTTCTTCACCCACCAAGTTTTCATTTCCCCAGCAGCAGCAACGGAGGCCGTATTGGAAGTGATCTTTCACTGTCAATGAGCGATCAACAACTGTGGCAATCCGGGCCTCCTCATTTTTTAGCAACTGCTGCAGCATCATCAGGATTCCCAACGCAGATAAGATCTTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCCTGA 1509 0.4897 MWDLNDSPDRRKDDESEGCSSLKTSIDGDDDKGKRVGSVSNSSSSAVVIEDGSEEDEAERSRTLKKRSSKIFGFCVTHEESMDSDGPPVTRQLFPVEEADMAVSSGGGSSAFPRAHWVGVKFCQPEGVGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEHELNSESSGNAADHNLDLSLGNSSSKHGNSQALGNDTPNSAIDQHMPSESNWRNGGFRPKLPLLPEQNTRSSTEEHGRDGQGEVEAWRLLSQSQLQPPGSKEMQRYGPYKASGEPQMLHSFAPLLHPPSFHFPSSSNGGRIGSDLSLSMSDQQLWQSGPPHFLATAAASSGFPTQIRSSQGWLQKNGFHTLMRPS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1620 502 FunFam AP2-like ethylene-responsive transcription factor 152 211 - -
Glsi05g1620 502 ProSiteProfiles AP2/ERF domain profile. 245 302 IPR001471 GO:0003700|GO:0006355
Glsi05g1620 502 FunFam AP2-like ethylene-responsive transcription factor 244 304 - -
Glsi05g1620 502 SUPERFAMILY DNA-binding domain 244 304 IPR016177 GO:0003677
Glsi05g1620 502 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Glsi05g1620 502 MobiDBLite consensus disorder prediction 311 388 - -
Glsi05g1620 502 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700|GO:0006355
Glsi05g1620 502 PRINTS Ethylene responsive element binding protein signature 284 304 IPR001471 GO:0003700|GO:0006355
Glsi05g1620 502 Pfam AP2 domain 244 293 IPR001471 GO:0003700|GO:0006355
Glsi05g1620 502 Pfam AP2 domain 153 201 IPR001471 GO:0003700|GO:0006355
Glsi05g1620 502 CDD AP2 244 304 IPR001471 GO:0003700|GO:0006355
Glsi05g1620 502 Gene3D AP2/ERF domain 152 211 IPR036955 GO:0003700|GO:0006355
Glsi05g1620 502 Gene3D AP2/ERF domain 244 303 IPR036955 GO:0003700|GO:0006355
Glsi05g1620 502 MobiDBLite consensus disorder prediction 1 36 - -
Glsi05g1620 502 ProSiteProfiles AP2/ERF domain profile. 153 209 IPR001471 GO:0003700|GO:0006355
Glsi05g1620 502 MobiDBLite consensus disorder prediction 311 358 - -
Glsi05g1620 502 SMART rav1_2 245 308 IPR001471 GO:0003700|GO:0006355
Glsi05g1620 502 SMART rav1_2 153 215 IPR001471 GO:0003700|GO:0006355
Glsi05g1620 502 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 389 - -
Glsi05g1620 502 MobiDBLite consensus disorder prediction 133 153 - -
Glsi05g1620 502 MobiDBLite consensus disorder prediction 1 62 - -
Glsi05g1620 502 CDD AP2 153 210 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1620 Glsi-ChrGlsi05 64536825 64539359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1620 1 340 AP2-EREBP Transcription Factor Family AT4G36920 69.296 8.99e-142 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi05g1620 AP2 3.4e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1620 05 64536825 64539359 Glsi09g0441 09 3000490 3003023 CCT
Glsi05g1620 05 64536825 64539359 Glsi05g1620 05 64536825 64539359 ECH