Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1616 ATGGCGTCGAAGCCTATGCCAGCCGGATCTGCTAATAGATCTGAGCCTCCTAATCCCTCCTCGACAAATATAGCACAAGACACAAGTCCTACTCTTAAGGATGTATCACTGGTTATTGATTCCCTAAAGAAACATATAGCTGCTGAGCGGTGTGTTTCTGTAAAGAAAAGAATGGAAGACAATAGACAGAAGATGGTTAGTGTCACAAACCAACTCACTAAATTATCAATGGAAAGAAGAACCTGCAGCATTACTGACACACATAAAATTCTGGACCTACTGACAAAGAGGCAAAAAGATGCAATTGATATGCACAATGGTATTCATGCAACTAGCAATGGAGATAGAGAGAACAATGGTTTCCAGGAAGATAACCATGGTTCTACAGCAGTTCTTCTAGGATCTAATGTTGCTGCAAAGAATCCTGTTCGCCCTATCAAGCTGCCAGAAGTAAAAAGATTACCTCCCTACACTACATGGATTTTTCTAGACAGAAATCAAAGAATGACGGAGGATCAGTCAGTAGTAGGTAGAAGGAGAATTTATTATGATCAAAATGGTGGAGAAGCACTTATTTGCAGTGACAGTGAGGAGGAAATAATAGAGGAAGAAGAGGAAAAAAGGGAATTTGTAGAATCTGAAGATTATATACTTTGCATGACTGTCAAAGAATTTGGTTTGTCTGATCTTGTTCTAGAATCATTGGCTCAGTGTTTTTCTAGAAACACTTCTGACGTGAAGGCAAGATATGAAGTTCTTAGTAATGAAGAAAATGCTGGTGGGGTTTCTAAGAATGGGAATACTGAAGAGAACCCACAAAGTGGAAATTGTTTTCTGGAAAAAGATCTTGAAGCAGCTCTTGATTCTTTTGACAACCTTTTTTGCCGAAGATGTCTTGTTTTCGATTGCAGATTGCATGGATGCTCTCAGGATCTTGTCTTTCCTGCTGAGAAACAAACTGTGTGGATCTCTCCTGATGCTGAACACGCACCATGTGGATCAAATTGTTTTCAATTGATACTGAAGTTGGAAAGATTTGCCAAAGTGTCCTCTTCTGCTCAAGGTGAAGTTGAAGGGAAATGCTCTGGAGGTGCTGGGGTGCTAATGTCATCGAGGAAGAAATCTTGTGGTCCATCTGTTAGAAGGCAGGTAAAGGGAAGCCAAAGTGAAAGTGCTTCATCTAATGCTAAGAACATATCTGAGAGTAGTGACTCAGAGAATGGTCCTGGACAGGACTCAGCCTCCCACTCAACACTGCCTAAAACTAAACCTGTGGGGAAAGGTGGAATTGGTAAGAGGAATAGTAAGCGAGTGGCAGAACGTGTTCTAGTTTGCTTGCAGAAGAGGCAGAAGAAAACAGTGGTATCTGATTCTGATTCAATTGGTGAAGCACCTGATCGCTCATCAAATGAGATGGTTACTGACCCACCTTTCATCAGTAGTGGTGACAGCTTGAGGAAGGAAGAGTTTGTGGATGAGAATGCATGTACACAAGAATCTACTGATAATAAATTGTGGAAACCTCTTGAAAAAGGTCTTCTGGAGAAAGGAGTGGAAATTTTTGGTAGAAACAGCTGTTTAATTTCAAGGAATCTCTTAAATGGTCTTAAGACATGTTGGGAGGTTTTCCAGTATATTAATTGCAATGAGGGTAAGGCATCAGGCCCTGCTGGTGATGCTGCAAATTCCCTTGTGGAAGGCTATTCCAAGGGTAATAATGAAGTAAGACGAAGATCAAGATTTTTGCGTAGAAGAGGAAGAGTCCGTCGCTTGAAGTATACTTGGAAATCTGCTGCTTACCATTCAATTAGGAAGAGGATTACGGAGAGAAAGGATCAGCCCTGCCGGCAGTATAATCCATGCGGTTGCCAATCAGCTTGTGGAAAGCAGTGTTCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGATGCCCCAAGAGTTGTAAGAATCGATTTCGTGGCTGTCACTGTGCTAAGAGTCAATGCCGAAGTCGTCAATGTCCATGCTTTGCTGCAGATAGGGAATGTGATCCGGATGTTTGTAGGAATTGTTGGGTCAGTTGTGGTGATGGTACTCTTGGGATTCCCAGCCAAAGGGGTGATAATTATGAATGTAGAAATATGAAGCTTCTTCTCAAGCAGCAACAAAGGGATGGAAACCATTGCCCAGGCCTATCCCTGCTGTCATTTCCACTTCTTATGGCTGAAGGGCTAAAATATTGTTCTCTGCCCCATCTATGTGAGGATTTGTTTCCAGTGGACAACCAGTCTTGTGTGGTCATGGATCTGAACGTGGATGATGAGTTGCCACATCATTGCCAAAGTTATGCTTGGCATGTTGGGAAATATTTGAAACTAGGACATACGAATAGAGGTGCTACTGACTGTGGCAAGACATGGTCACAAAATACTGGATGTGATTGGATGTGGCTGGAAAACGCTGGGATCTTGCCAAGGTGTGGAGTTGATTCCCATGAAATGCCTCCACTGCCATCCCTATTGTGGGTGCCAGGGAAATGTCCTTTTGTCTTTCCCGTTTTGGGAGGTCTTCATTGGGTTGCGGGTTTGCATGGATTTGTTCTATTCCTTTGTGCAATGTTCATGATTAGTGTTTGTGTTCTTCTTGGAAGGTCTGATGTATCTGGCTGGGGAGCTTTCTTAAAGAATGGTGTTGGGAAGCATGAATACCTTGGTGAGTATACTGGGGAGTTAATTTCACATCGAGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAGAATTCGTCATTTCTCTTTAATCTGAATGATCAGTTTGTTCTTGATGCTTACCGGAAGGGTGACAAATTGAAGTTTGCCAACCATTCTCCTGATCCAAATTGTTATGCAAAGGTTATTATGGTTGCTGGGGATCACAGGGTAGGCATTTTTGCCAAGGAAAGGATTAGTGCTGGGGAGGAACTTTTTTATGATTATCGTTATGAGCCAGATAGAGCTCCAGCCTGGGCTCGGAAGCCTGAGGCATCTGGGTCAAGAAAAGATGACGGTGCTCCTTCAAGTGGTCGTGCGAAGAAGCTTGCTTGA 3069 0.4268 MASKPMPAGSANRSEPPNPSSTNIAQDTSPTLKDVSLVIDSLKKHIAAERCVSVKKRMEDNRQKMVSVTNQLTKLSMERRTCSITDTHKILDLLTKRQKDAIDMHNGIHATSNGDRENNGFQEDNHGSTAVLLGSNVAAKNPVRPIKLPEVKRLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYDQNGGEALICSDSEEEIIEEEEEKREFVESEDYILCMTVKEFGLSDLVLESLAQCFSRNTSDVKARYEVLSNEENAGGVSKNGNTEENPQSGNCFLEKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQTVWISPDAEHAPCGSNCFQLILKLERFAKVSSSAQGEVEGKCSGGAGVLMSSRKKSCGPSVRRQVKGSQSESASSNAKNISESSDSENGPGQDSASHSTLPKTKPVGKGGIGKRNSKRVAERVLVCLQKRQKKTVVSDSDSIGEAPDRSSNEMVTDPPFISSGDSLRKEEFVDENACTQESTDNKLWKPLEKGLLEKGVEIFGRNSCLISRNLLNGLKTCWEVFQYINCNEGKASGPAGDAANSLVEGYSKGNNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQSACGKQCSCLQNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGIPSQRGDNYECRNMKLLLKQQQRDGNHCPGLSLLSFPLLMAEGLKYCSLPHLCEDLFPVDNQSCVVMDLNVDDELPHHCQSYAWHVGKYLKLGHTNRGATDCGKTWSQNTGCDWMWLENAGILPRCGVDSHEMPPLPSLLWVPGKCPFVFPVLGGLHWVAGLHGFVLFLCAMFMISVCVLLGRSDVSGWGAFLKNGVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSRKDDGAPSSGRAKKLA 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1616 1022 SMART CXC_2 652 689 IPR033467 -
Glsi05g1616 1022 ProSiteProfiles CXC domain profile. 604 703 IPR026489 -
Glsi05g1616 1022 MobiDBLite consensus disorder prediction 13 29 - -
Glsi05g1616 1022 Coils Coil 194 214 - -
Glsi05g1616 1022 ProSiteProfiles SET domain profile. 873 988 IPR001214 GO:0005515
Glsi05g1616 1022 MobiDBLite consensus disorder prediction 371 434 - -
Glsi05g1616 1022 MobiDBLite consensus disorder prediction 1 29 - -
Glsi05g1616 1022 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1022 IPR025778 GO:0031519
Glsi05g1616 1022 MobiDBLite consensus disorder prediction 462 477 - -
Glsi05g1616 1022 SMART set_7 873 994 IPR001214 GO:0005515
Glsi05g1616 1022 SUPERFAMILY SET domain 832 991 IPR046341 -
Glsi05g1616 1022 SUPERFAMILY SET domain 592 691 IPR046341 -
Glsi05g1616 1022 MobiDBLite consensus disorder prediction 455 483 - -
Glsi05g1616 1022 MobiDBLite consensus disorder prediction 381 420 - -
Glsi05g1616 1022 CDD SET_EZH 875 989 - -
Glsi05g1616 1022 Pfam CXC domain 656 687 IPR041355 -
Glsi05g1616 1022 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 27 719 IPR045318 GO:0006338|GO:0042054
Glsi05g1616 1022 MobiDBLite consensus disorder prediction 996 1022 - -
Glsi05g1616 1022 MobiDBLite consensus disorder prediction 996 1015 - -
Glsi05g1616 1022 Pfam SET domain 885 987 IPR001214 GO:0005515
Glsi05g1616 1022 Gene3D SET domain 869 990 IPR046341 -
Glsi05g1616 1022 Gene3D SET domain 618 721 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1616 Glsi-ChrGlsi05 64467296 64481676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1616 879 991 C2H2 Transcription Factor Family AT2G23740 28.462 2.36e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi05g1616 SET 1.8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1616 05 64467296 64481676 Glsi05g1616 05 64467296 64481676 ECH