Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1611 ATGTACAACTATGATAGTAATCCCTGTGCTTCCTCAACTTTAGCTTTTTCCTCGCCTTCACCTCAAGAGGAAATCTCCCTTTTCCTGCGTCAGTTTCTCCTCCCTTCATCCTCCTCGGCATCGTCGCCTTCGCATATGACCCATATGGGTAAAAATGCACACCGCTCCATGTCGTCGACGTCCATGGCTGGTCTCCACCCTTCCTATCGATCATCACCATTCCAAGATGGGATCTCGGCTGTCGATTCCACCCTTGGAGGAAGCACTTCAAATGATGTTTTTCTGTCGTCTTCTGGAATTTGTAGTTCCGCCAATACGAAGGGAAATTCTGCAGTGAATGTGTCTTCGTCATCTTTGGGAGTATGTGAGAATGAGTATCATTGTGAAAGTGAGGAAGGGTTTGAAGCATTGGCAGAAGCGCAGCCGGAAAATCCTCGTAGGACTTCATCAAAGAGAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGACGGACAAGGCTTCAATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAGGTACAGATGCTGTCGATGAGAAATGGTTTGAGTTTGCATCCTATGTGCTTCGCTGAAGACATGCAGACTCTGCAATTGTCTCAAATGGGAACGGAGCTTGATGAAGAAAACAGTTGTTTGCCTTTAAACATGACAGCTACTCTGCCTTTGCATCAAGAAAACCCCTTGCCCTACGTATCCACCCTGCCTAACGAACGCACTTCACGGGACCAGCCATCAGTGCCCTCTCCATCATATGTAATCAAGCCAGAAACCTCTTTTGGGCTGGAATCCTCAATGATAGCGCATTTAAGACCCTTTCATTTGAAAAGAACTTCTGACATTCGTAGGGATGATGACATATTGCAGCATCAGCAATTAAATGCAAACCATTCAGATGCCAATCCTTCAGGTGGTTCTCAAGGTGTGCATGTTTCTTCTTGTAGAATCAGTGTATCATTCCATCAGAATTCAACAACCTTGTGA 1017 0.4523 MYNYDSNPCASSTLAFSSPSPQEEISLFLRQFLLPSSSSASSPSHMTHMGKNAHRSMSSTSMAGLHPSYRSSPFQDGISAVDSTLGGSTSNDVFLSSSGICSSANTKGNSAVNVSSSSLGVCENEYHCESEEGFEALAEAQPENPRRTSSKRSRAAEVHNLSEKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFAEDMQTLQLSQMGTELDEENSCLPLNMTATLPLHQENPLPYVSTLPNERTSRDQPSVPSPSYVIKPETSFGLESSMIAHLRPFHLKRTSDIRRDDDILQHQQLNANHSDANPSGGSQGVHVSSCRISVSFHQNSTTL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1611 338 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 164 IPR031066 -
Glsi05g1611 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 192 IPR036638 GO:0046983
Glsi05g1611 338 MobiDBLite consensus disorder prediction 138 164 - -
Glsi05g1611 338 MobiDBLite consensus disorder prediction 38 65 - -
Glsi05g1611 338 Gene3D - 121 197 IPR036638 GO:0046983
Glsi05g1611 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 181 IPR011598 GO:0046983
Glsi05g1611 338 Pfam Helix-loop-helix DNA-binding domain 132 182 IPR011598 GO:0046983
Glsi05g1611 338 MobiDBLite consensus disorder prediction 145 164 - -
Glsi05g1611 338 Coils Coil 171 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1611 Glsi-ChrGlsi05 64439795 64443399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1611 124 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 38.813 2.70e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g1611 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1611 05 64439795 64443399 Glsi05g1611 05 64439795 64443399 ECH