Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1608 ATGGCGGATGAACAGCCCTCAACGGCCGCGAGACGAAGGGGAAGAGGAGCCGAGGCATCGGCCCGTTCCGAAGCGTTAGAACGTCTGAAAGCTCGACTCCGCGGTGGTCGCCGTTCGGATGGTGATGGGTTCCAAGTTAAGTTGGAAAACCCTGTTTATGACACGGTCCCTGAGGACGAGTACAATGCCCTCGTCGCCAAGCGCCGCGAACAAGCCCGAGACTTCATCGTTGACGATGACGGTCTGGGGTACGGGGACGAAGGTGAGGAGGAGGATTGGTCTAAAGCTGGGTTCACTCTGTCGTCCGATGAATCTGATGGTGAATCAGAAAGGCCCAAAAGGAAGAAAGTAGAAAAGAAAGATCCGCAACCTAAAAGGCCATCTTCTTCGCTCTCGGCTGCGGCAGCGATGATGGGGGCGCAGAGGTTGTCATCGATGTTCACTTCGTCAGTTTTTAAGAAAAGTAAGGATGATACGGCTAAAGGACTTTCATGTGATAGTATCGTTGATGACGTTATTGCGGAGTTTGCACCCGATGAGTCTGATAGACTTAGGCGTAGAAGGGGACCGGCGAATTCCTCATCTGGTGTAAATAACACCGTGCCGATTAATAACTTCAAGAGCGAGGAATCACTGATTGGGCGTCCTGATCCATTGGGAGGTGCCTTATTGTCCGAACCTATTCCAAATGGCAATCTTGAATTGATCAGAGTTGTTAAAAATGATGGTTGTGCCTTGGGTTCTGAGCGAAACTACAAAGAAGTCAGAGAAGAGGCATCTACCAAAGAATCTGAAGATGGAAAAGATTTTAATTCCGAAAATGGCCAGGCACCAATCGTGCAACCACATGTCTATCCAACTAATGGAGTTGTGATGGAGGAGAAAATGTTAAAGGATGTCGAAATAGAAGCTAAACAAATAATAAAGAAGGAGGTCTTTGCTCTGAATGCAAAAGTTAAAGAAGACAACCCGGCACTGAGTGCTACTGCTGGTTGGCAGGCAACGAAAAGTGGAGGGGAAGTCAACGCCGCTGATTCAAAGGTAGTCAAAGATGCTTCAAATAGTGAAGAAAACTCAGAGTTTAATCTGGAGGCAGATGGATCGCTGCCTTTCTACATACTTGATGCCCATGAAGAGTTCTATGGAGCTAATATGGGCACCCTATATTTGTTTGGGAAGGTCAAAGCAGGTGATTCGTATCATAGTTGCTGTGTTGTTGTGAAGAACATGCAGAGGTGTGTTTATGCTATCCCAAATCGCCCTTTACATTATGCTGATGAGATGGTGAAGCTTGAGAAAGAAGTTGAAGAGTCCCGGATTTCTCCTACAGATTTTCATAAAAAGCAGCAAGATATGGTATCTGGTTTAAAGAATGACATAGCAAAACAGCTGTTAGATCTGAACGTTTCAACCTTTAGCATGGTTCCTGTTAAGAGGAAATATGCATTTGAACGATCTGACATACCTGCTGGTGAAAATTATGTGCTGAAAATCAATTATCCATTCAAGGATCCACCCCTTCCACTGGACCTGAAAGGAGAGAGTTTCAGTGCTCTTCTAGGAACTCATTGCAGTGCGTTGGAGCTTTTTCTTATTAAAAGAAAGATAAAGGGGCCTTCATGGCTATTGGTTTCAAACATTTCTACCCGCTCGGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTAATTGTTGACTCTCCTAAAGACATAAGGATTTCGGGTACCTCAAAATTCAGTTTCGAGATTCCTCCTGCTGTTGTCACAGCTGTCAATTTGAAAACCACCATTAATGAAAAACAAAACATAAATGAGATTGTCTCTGCATCCATTGTTTGCTGCCGCAGGGTTAAGATTGACACTCCCATGTTGGCTTCAGAATGGAAGAGACCTGGAATGCTGACTCATTTTACTGTTGTTCGTAAGCTTGATGGAGGCATATTTCCATTAGGATTCAGTAAGGAGGTTACAGATCGAAACTTAAAAGCTGGATCAAATGTTCTCTGTGTTGAAAGCAGTGAAAGGGCTTTGCTAAACCGGTTGATGATAGAATTACACAAATTGGATAGTGATGTTCTTGTTGGTCATAATATTTCTGGATTTGACCTAGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTGCCAAGCAGCATGTGGTCCAAAATAGGCCGCCTCAAGCGTTCTGTGATGCCTAAGCTTACCAGAGGAAGCACTATTTTTGGTTCTGGAGCTAGTCCTGGGATCATGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCCCGTGATCTACTAAAGGAGGTTAGCTACTCTTTATCTCAACTTGCAAAAACTCAGCTGAACAAAGTTCGGAAGGAAGTTGCTCCGCATGATGTTTCTAAAATGTTCCAATCAGCAGAATCTCTTGTGGATCTTATTGAATATGGCGAGACAGATGCATGGTTGTCTATGGAACTGATGTTTCACTTGAGTGTTCTCCCTCTCACTCGTCAGCTGACTAATATTAGTGGTAATCTGTGGGGAAAAACTCTTCAGGGTGCAAGGGCACAGAGAGTGGAGTATCTTTTGTTGCATGCTTTCCATGCAAAGAAATATATTGTCCCAGATAAGATTCCTTCCCATGCAAAAGTAACAAAATTGACTAAACGAAGAGTAACTCATGGTGTTGAGGATGGAAATTTGGATGAAGCAGATGTTGATGATACAAACTATGACAATGATGCTGCTGACAGTGATCACAGGAAAAGCAAAAAGGCTCCATCCTATGCTGGAGGATTGGTATTAGAGCCAAAGAGGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTTACAACTGTTGAAAGATCTTCGGATGGATCTTTTCCTCATCTACCGTCTAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTGAAAAATTTGGTTCAAAGGAGGAGAATGGTAAAGTCATGGATGAAGACTGCATCTGGTCTTAAAGTTCAGCAACTGGACATTCAGCAACAAGCACTAAAGCTTACTGCAAACAGTATGTATGGATGCCTGGGATTTGCTAATTCAAGATTTTATGCAAAGCCACTAGCAGAGCTTATAACCCTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGGCTAGATGACATTGCGAAAGCAAAAGCAATGGCTGGAAAAGTTATTCAAGAGGTCAACAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGAATGCTACTTCTTAAGAAAAAGAAATATGCAGCTGTCAAGGTGCAGTTCAAAGATGGCACACCATATGAGGTTATTGAACGTAAAGGTCTTGATATTGTTCGTCGTGACTGGAGCTTATTATCTAAAGAAATAGGAGATTTTTGCCTAAGTCAAATTTTGTCAGGAGGATCATGTGAGGATGTTGTTGAAACAATTCACAGCTCTCTCAGGAAGGTGCAAGAAGAGATGAGGATTGGACAAGTACCGCTAGAGAAATATATTATCACTAAGACATTGACTAAACCTCCTGATGCCTATCCAGATGCCAAAAATCAACCGCATGTTCTTGTGGCACTAAGACTGAAGCAAAAGGGTTACTCATCTGGTTGCTCTGTTGGTGATACAATCCCCTATATAATTTGCTATGAGCAGGGCAGTAGTTCAGGCAGTACTGCAGGTATTGCTCAGCGTGCCAGGTATCCTGATGAACTAAAACAGGAACAAGGGAATTGGATGATTGACATTGATTACTACCTGTCACAACAGATTCATCCTGTTGTATCACGTCTTTGTGCATCAATTCAGGGCACGAGTCCAGAAAGACTTGCTGATTGTTTAGGGCTTGATGCATCAAAAGTAGAACTTCTTTCCTACTGTTTTCAACATAAATCAAGTGAAACCTCCAGTGGTGATCCTTCAAGCTCACTCTTGTTTGCTGCTGATGATGAGGAGAGGTATCAAGGATGTGAGCCGTTGGTGTTGTCATGTCCTAGCTGCTCTGGCACTTTTGATTGCCCATCTGTCTCTAAGTCTATTTGTTTATTTGGGAGTGAAAATCCAACAAGCTTAGGCATGGAGGAGTCAAACTACAATTTCTGGCGTATGTTGCGCTGTCCTAAATGCCCAGAAAAAGATGGTGTCGGCAGGATTTCTCGTGCGATGATAGCCAATCAGGTCAAAAGGCAAGCAGAGAAGTTTGTGTTAACGTACTATAGAGGCTTACTTATGTGTGAAGATGAAACATGCAAATATGCAACACGAAGTATCAACCTTCGGCTGGTTGGTGATGCTGAAAGAGGAACTGTCTGTCCAAATTATCCTCGCTGCAATGGGCGTCTTCTAAGAAAGTACACGGAGGCAGACTTGTACAGACAGCTCTCATATTTTTGTCATGTATTAGATACTGTTTCCTGTATAGAAAAGATGGAGGCTAAAGCTAGGATACCACTAGAGAAAGAGTTGACCAAAATTAGGCCAATGGTTGATCTGGCAGCATCAACAGTACAAAAGATTCGGGATCGTAGTGCATATGGATGGGTACAGCTGCAGGACTTCGTCATTAATATATAA 4689 0.4276 MADEQPSTAARRRGRGAEASARSEALERLKARLRGGRRSDGDGFQVKLENPVYDTVPEDEYNALVAKRREQARDFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGESERPKRKKVEKKDPQPKRPSSSLSAAAAMMGAQRLSSMFTSSVFKKSKDDTAKGLSCDSIVDDVIAEFAPDESDRLRRRRGPANSSSGVNNTVPINNFKSEESLIGRPDPLGGALLSEPIPNGNLELIRVVKNDGCALGSERNYKEVREEASTKESEDGKDFNSENGQAPIVQPHVYPTNGVVMEEKMLKDVEIEAKQIIKKEVFALNAKVKEDNPALSATAGWQATKSGGEVNAADSKVVKDASNSEENSEFNLEADGSLPFYILDAHEEFYGANMGTLYLFGKVKAGDSYHSCCVVVKNMQRCVYAIPNRPLHYADEMVKLEKEVEESRISPTDFHKKQQDMVSGLKNDIAKQLLDLNVSTFSMVPVKRKYAFERSDIPAGENYVLKINYPFKDPPLPLDLKGESFSALLGTHCSALELFLIKRKIKGPSWLLVSNISTRSASQRVSWCKFEVIVDSPKDIRISGTSKFSFEIPPAVVTAVNLKTTINEKQNINEIVSASIVCCRRVKIDTPMLASEWKRPGMLTHFTVVRKLDGGIFPLGFSKEVTDRNLKAGSNVLCVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKIGRLKRSVMPKLTRGSTIFGSGASPGIMSCIAGRLLCDTYLCARDLLKEVSYSLSQLAKTQLNKVRKEVAPHDVSKMFQSAESLVDLIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPSHAKVTKLTKRRVTHGVEDGNLDEADVDDTNYDNDAADSDHRKSKKAPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPHLPSSKTTGVLPELLKNLVQRRRMVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLSKEIGDFCLSQILSGGSCEDVVETIHSSLRKVQEEMRIGQVPLEKYIITKTLTKPPDAYPDAKNQPHVLVALRLKQKGYSSGCSVGDTIPYIICYEQGSSSGSTAGIAQRARYPDELKQEQGNWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDASKVELLSYCFQHKSSETSSGDPSSSLLFAADDEERYQGCEPLVLSCPSCSGTFDCPSVSKSICLFGSENPTSLGMEESNYNFWRMLRCPKCPEKDGVGRISRAMIANQVKRQAEKFVLTYYRGLLMCEDETCKYATRSINLRLVGDAERGTVCPNYPRCNGRLLRKYTEADLYRQLSYFCHVLDTVSCIEKMEAKARIPLEKELTKIRPMVDLAASTVQKIRDRSAYGWVQLQDFVINI 1562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1608 1562 FunFam DNA polymerase 1352 1548 - -
Glsi05g1608 1562 MobiDBLite consensus disorder prediction 895 924 - -
Glsi05g1608 1562 CDD DNA_polB_alpha_exo 584 835 - -
Glsi05g1608 1562 Gene3D - 411 537 - -
Glsi05g1608 1562 MobiDBLite consensus disorder prediction 252 270 - -
Glsi05g1608 1562 Gene3D - 584 897 IPR036397 GO:0003676
Glsi05g1608 1562 Gene3D Palm domain of DNA polymerase 912 1137 IPR023211 -
Glsi05g1608 1562 MobiDBLite consensus disorder prediction 1 24 - -
Glsi05g1608 1562 Gene3D - 1150 1331 IPR042087 -
Glsi05g1608 1562 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Glsi05g1608 1562 Pfam DNA Polymerase alpha zinc finger 1353 1558 IPR015088 GO:0003887|GO:0006260
Glsi05g1608 1562 Coils Coil 1100 1120 - -
Glsi05g1608 1562 Gene3D Helix hairpin bin 982 1033 - -
Glsi05g1608 1562 MobiDBLite consensus disorder prediction 78 134 - -
Glsi05g1608 1562 Gene3D - 371 570 - -
Glsi05g1608 1562 Gene3D DNA Polymerase alpha, zinc finger 1352 1548 IPR038256 -
Glsi05g1608 1562 MobiDBLite consensus disorder prediction 252 282 - -
Glsi05g1608 1562 FunFam DNA polymerase 584 898 - -
Glsi05g1608 1562 Pfam DNA polymerase family B, exonuclease domain 399 778 IPR006133 -
Glsi05g1608 1562 Pfam DNA polymerase family B 843 1306 IPR006134 GO:0000166|GO:0003677
Glsi05g1608 1562 SUPERFAMILY DNA/RNA polymerases 868 1321 IPR043502 -
Glsi05g1608 1562 ProSitePatterns DNA polymerase family B signature. 1074 1082 IPR017964 GO:0000166|GO:0003676
Glsi05g1608 1562 FunFam DNA polymerase 411 537 - -
Glsi05g1608 1562 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1559 - -
Glsi05g1608 1562 SMART polmehr3 584 1086 IPR006172 GO:0000166|GO:0003676|GO:0003887
Glsi05g1608 1562 NCBIfam DNA polymerase (pol2) 51 1304 - -
Glsi05g1608 1562 MobiDBLite consensus disorder prediction 181 203 - -
Glsi05g1608 1562 MobiDBLite consensus disorder prediction 31 50 - -
Glsi05g1608 1562 FunFam DNA polymerase 984 1033 - -
Glsi05g1608 1562 PRINTS DNA-directed DNA-polymerase family B signature 943 956 IPR006172 GO:0000166|GO:0003676|GO:0003887
Glsi05g1608 1562 PRINTS DNA-directed DNA-polymerase family B signature 1019 1031 IPR006172 GO:0000166|GO:0003676|GO:0003887
Glsi05g1608 1562 PRINTS DNA-directed DNA-polymerase family B signature 1072 1080 IPR006172 GO:0000166|GO:0003676|GO:0003887
Glsi05g1608 1562 MobiDBLite consensus disorder prediction 104 125 - -
Glsi05g1608 1562 CDD POLBc_alpha 919 1322 IPR045846 GO:0003887|GO:1902975
Glsi05g1608 1562 FunFam DNA polymerase 1150 1336 - -
Glsi05g1608 1562 SUPERFAMILY Ribonuclease H-like 366 872 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1608 Glsi-ChrGlsi05 64412542 64425559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1608 1 1560 Core DNA Replication Machinery Family AT5G67100 62.025 0.0 1902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1608 05 64412542 64425559 Glsi05g1608 05 64412542 64425559 ECH