Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1601 ATGAACGACTCTTCGGAGACTTTGAAGGCAGAGTTATTTGATTTTCGTTTCCTCCCGAGGCAAAGCAGACAACAGAACAATTCTATGGATTGGGATCGAGGAGCATCCGTTGGTTGTGGAAGCTTTGCCACCGTTCATCTTGCAATTCCCAGAAACACTTGCTCTCTATTTTCTTCCCCCACAGCCGTCAAGTCCTCCGATGTTTTCACCTGTTCTTCCCTCAAGAACGAGGAACATGTGCTCGGTCGCCTTGGACTTTGCCCACAAATCATTAGATGTTTTGGCCATGACTATTCCTTTGAAAACGGGGAGGAGTGCTATAATCTGTTTCTGGAATATGCCTCCGGCGGTAGTCTCGCTGATCAGCTCAAAATTCGCGGCGGTCGATTCCCAGAATCCTATGTGCGCCGATACACGAGGTCCATCGTCCAAGGACTCAGACATGTTCACGCCAACGGCTTCGTCCACTGCGATATAAAGCTCCCAAACATTCTTCTGTTTCACGACGGCGACGTCAAAATTGCCGACTTTGGACTTGCCAAGAAGTCGGGGGAAAAACAGAGCAACGAAGAAACCAAGTGCGAGCTCAGAGGAACTCCTTTGTGTATGTCCCCAGAATCAGTAAACGAGAACGACTACGACTGTCCGGCGGATATATGGGCTCTCGGCTGTGTAGTGGTTGAGATGGTGACCGGCAAACCCGCCTGGAATTTCAACGAGAGGTCCAATATTTTCTCATTGTTGATGCGAATTGGGGTAGGAGAAGAATTGCCGGAGATTCCCAATGAATTATCAGAAGAAGGGAAGGATTTTCTTAGAAAGTGTTTGGTGAAGGATCCCAGCAAGAGATGGACGGCAGAGATGCTTTTGAAGCATCCCTTTGTCGTCGTCGACGAACCTGTTTTATTAAAGGAGGTCAATGAGCAAGGGACATCGCCAAGAAGTCACTTCGATTTTCCAGATTGGGTTTCGAGTTCTATGGCTTCAGTTCCGGGATCACCGGAATCTCATGACTGGTGTGAACGGGAATTTGATTCATGGTGTTTCCCTAGTATCTGTTCACCGGCGGATAGGCTCCAGCAGCTGGCGACGAATCAGAGGCCAAATTGGTCGGAATCTGACAGTTGGGCTCTTATTAGGGGAGAATAA 1149 0.4848 MNDSSETLKAELFDFRFLPRQSRQQNNSMDWDRGASVGCGSFATVHLAIPRNTCSLFSSPTAVKSSDVFTCSSLKNEEHVLGRLGLCPQIIRCFGHDYSFENGEECYNLFLEYASGGSLADQLKIRGGRFPESYVRRYTRSIVQGLRHVHANGFVHCDIKLPNILLFHDGDVKIADFGLAKKSGEKQSNEETKCELRGTPLCMSPESVNENDYDCPADIWALGCVVVEMVTGKPAWNFNERSNIFSLLMRIGVGEELPEIPNELSEEGKDFLRKCLVKDPSKRWTAEMLLKHPFVVVDEPVLLKEVNEQGTSPRSHFDFPDWVSSSMASVPGSPESHDWCEREFDSWCFPSICSPADRLQQLATNQRPNWSESDSWALIRGE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1601 382 Gene3D Phosphorylase Kinase; domain 1 24 120 - -
Glsi05g1601 382 FunFam Mitogen-activated protein kinase kinase kinase 17 30 326 - -
Glsi05g1601 382 CDD STKc_MAPKKK 30 295 - -
Glsi05g1601 382 ProSiteProfiles Protein kinase domain profile. 31 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1601 382 ProSitePatterns Protein kinases ATP-binding region signature. 37 64 IPR017441 GO:0005524
Glsi05g1601 382 Gene3D Transferase(Phosphotransferase) domain 1 121 318 - -
Glsi05g1601 382 SMART serkin_6 31 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1601 382 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 24 337 - -
Glsi05g1601 382 Pfam Protein kinase domain 34 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1601 382 SUPERFAMILY Protein kinase-like (PK-like) 30 330 IPR011009 -
Glsi05g1601 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1601 Glsi-ChrGlsi05 64364785 64365933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1601 29 380 MAP Kinase Kinase Kinase AT5G67080 53.151 4.12e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi05g1601 Pkinase 1.2e-55 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1601 05 64364785 64365933 Glsi09g0453 09 3114847 3115878 CCT
Glsi05g1601 05 64364785 64365933 Glsi05g1601 05 64364785 64365933 ECH