Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1600 ATGGATGTGGACACACTGACAACTTCTGCGGGTGACAGCAGCAGCATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTTCCTGAATTTTCTGAACCTTTTTTTCACACTCCCATATACCCCGAACCCACCGCCACTCTGCCCATAATCCCCAACTTAAATGTGGCACCCCCAACTTTGATTAATCTACCACCATCCTCTGTTAATTTTGTTAACAATCCAATTCAACAACCCACATGTTTTCCCCACTCATCATCAGAGAAAAGTAATTCCATGGCAGCCATGAGAGAAATGATTTTCCGAATAGCAGTAATGCAACCGATTCACATAGACCCAGAATCCATCAAGCCACCAAAGCGAAGGAATGTGAAGATTTCGAAGGACCCGCAGAGCGTGGCAGCGAGGCACAGAAGGGAAAGGATAAGCGAAAGGATAAGAATTCTGCAGAGATTAGTTCCTGGTGGGACAAAAATGGATACCGCTTCTATGTTAGATGAAGCTATCCATTACGTGAAGTTCTTAAAGAAACAGGTGCAGACGCTGGAACAAGCAGGGGCTACTACATCCTTAGATGTTGGTTTCCCAGGGATGTCAAACGCCAGTGTGAATTATTCTGCTTTCATGAAGGGCTGCCAACCTTCTCGAATGCAAATGCTCAGCTGA 666 0.4505 MDVDTLTTSAGDSSSMDMMAMMMQMEKFPEFSEPFFHTPIYPEPTATLPIIPNLNVAPPTLINLPPSSVNFVNNPIQQPTCFPHSSSEKSNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATTSLDVGFPGMSNASVNYSAFMKGCQPSRMQMLS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1600 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Glsi05g1600 221 SMART finulus 132 181 IPR011598 GO:0046983
Glsi05g1600 221 FunFam BHLH transcription factor 129 192 - -
Glsi05g1600 221 Pfam Helix-loop-helix DNA-binding domain 135 175 IPR011598 GO:0046983
Glsi05g1600 221 CDD bHLH_AtIND_like 127 183 - -
Glsi05g1600 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 187 IPR036638 GO:0046983
Glsi05g1600 221 Coils Coil 165 185 - -
Glsi05g1600 221 Gene3D - 125 192 IPR036638 GO:0046983
Glsi05g1600 221 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 72 200 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1600 Glsi-ChrGlsi05 64355214 64355879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1600 12 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 55.869 4.00e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g1600 HLH 1.2e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1600 05 64355214 64355879 Glsi05g1600 05 64355214 64355879 ECH