Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1597 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATTCCTTGGGAAGTCGATACTGAGGGGTTGAGAGAATATATGAGCAAATTTGGTGAGTTGGAAGATTGTATTGTCATGAAGGAGAGGTCGACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTGCATCAATTGATGATGCTAAGAATGCATTGTCTAGCGAACACATTCTTGGCAACAGGATGCTGGAACTCAAAGTGGCCACGCCAAAGGAGGACATGAGGGCAGCACCAGTAAAAAAAGTTACCAGGATTTTTGTGGCCAGGATTCCACAATCTGTAACAGAAGCAGCTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTATACATGCCAAAGGATCAAGGTTCAAAAATGCATCGTGGAATAGGTTTTATCACTTTTGCAAGTGCAGAATCTGTAGAAAATTTGATGTCGGAAACTCATGAACTGGGAGGTTCTGCTGTGGTAGTTGATCGAGCAACACCTAAGGAAGATGACTTCAAGCCAATTGGCAGAATGGCACAGGGAGGATATGGTGCATATAATGCATATATTTCTGCTGCAACTAGATATGCGGCACTTGGTGCTCCTACATTGTATGACCATCCTGGCTCAATTTATGGAAGGGGAGAACCTACTCGAGGTATGGGCAAAAAGATATTTGTTGGCCGTCTTCCACCAGAGGCAACCGCTGAGGATCTTCGCCAGTATTTTGGCCGATTTGGTCTTATATCAGACGTTTATGTTCCTAGGGATCCTAAGAGAACAGGGCATAGAGGTTTTGGTTTTGTCACTTTCGCTGAAGATGGTGTGGCAGATCGTGTCTCTCGAAGGTCGCATGAGATTTGTGGACACGAGGTCGCAATAGATTCAGCCACTCCTCTTGATGACGCGGGGCCCAGTAATAATTTTATGATGAATACTGTGGATTCTTATGGCGGATATGGTGGTCCTATGCGCACCTATGGGAGGATGTATGGTAGCCTAGACTTTGATGATTGGGGTTATGGACTTGGCGGAGGTAGACCATCAAGAGCAGATTGGAGGTATAGGCCGTACTAG 1083 0.4478 MEQRKLVVLGIPWEVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASIDDAKNALSSEHILGNRMLELKVATPKEDMRAAPVKKVTRIFVARIPQSVTEAAFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASAESVENLMSETHELGGSAVVVDRATPKEDDFKPIGRMAQGGYGAYNAYISAATRYAALGAPTLYDHPGSIYGRGEPTRGMGKKIFVGRLPPEATAEDLRQYFGRFGLISDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHEVAIDSATPLDDAGPSNNFMMNTVDSYGGYGGPMRTYGRMYGSLDFDDWGYGLGGGRPSRADWRYRPY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1597 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 282 IPR000504 GO:0003723
Glsi05g1597 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 66 IPR000504 GO:0003723
Glsi05g1597 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 153 IPR000504 GO:0003723
Glsi05g1597 360 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 222 333 - -
Glsi05g1597 360 Gene3D - 1 85 IPR012677 -
Glsi05g1597 360 SUPERFAMILY RNA-binding domain, RBD 90 188 IPR035979 GO:0003676
Glsi05g1597 360 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Glsi05g1597 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Glsi05g1597 360 FunFam RNA-binding family protein isoform 1 222 305 - -
Glsi05g1597 360 Gene3D - 86 175 IPR012677 -
Glsi05g1597 360 SUPERFAMILY RNA-binding domain, RBD 225 325 IPR035979 GO:0003676
Glsi05g1597 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 301 IPR000504 GO:0003723
Glsi05g1597 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Glsi05g1597 360 Gene3D - 223 305 IPR012677 -
Glsi05g1597 360 SMART rrm1_1 94 165 IPR000504 GO:0003723
Glsi05g1597 360 SMART rrm1_1 5 76 IPR000504 GO:0003723
Glsi05g1597 360 SMART rrm1_1 226 297 IPR000504 GO:0003723
Glsi05g1597 360 FunFam heterogeneous nuclear ribonucleoprotein 1 84 177 - -
Glsi05g1597 360 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1597 Glsi-ChrGlsi05 64306043 64314081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1597 5 274 Eukaryotic Initiation Factors Gene Family AT1G71770 22.744 1.80e-13 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1597 05 64306043 64314081 Glsi05g1597 05 64306043 64314081 ECH