LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi05g1591	ATGTCGCAGAGATCGGTGCCGGCGCCGTTTTTGACGAAGACGTACCAGTTTGTGGATGATCCGGCCACCGACGACGTGATATCGTGGAGTGACGGTGGCAACGCATTTGTCGTGTGGAAGCATGCGGATTTCGCTAAGGATTTGCTTCCCAAATACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAGCTTAACACCTATGGATTTCGAAAGATCGTTCCTGACAAATGGGAATTTGCCAATGAATATTTCAAGCGAGGACAGAAGGAGCTCCTCTCTGAGATCAAACGCCGGAAAACTGTGACCCAATCGTCGGCGCAGGTCTCGGCCGCCGGGAAATCGGGCGGCGGTTGTAACTCTGGATCGAACTCCGGCGGTGATGAGATGGGGTCGACCTCCACCTCGTGTCCGGATTCAAAGAATCCAGGAACCGTGGAGACGACGACCCAACAGGTGAACTTATCAGGTGAGAACGAGAGACTGAGGAAGGATAACGAAGTGCTGAGCGGGGAGCTGGCCCAAGCAAAGAAGCAGTGCGATGAGCTGATAGGTTTTCTGATGGAGTATGTGAAGGTGGAACCCGATCAGATCCATCGCATCATGCGACAAGCAAGTTGTGGGTCCAGGCACAAAGATGACGACGAAAACGCGGTAGGCGAAGGTGGGGAGAAGTTGAAACTGTTTGGGGTTTGGTTGAAGGGAGAGGAGAAAACAAGCACCCGCAGCAACAAAAGGGGGCGCGAAGACCAAATAGAGTTGAAAGCTGTTGATTTTGGTTCTCCTGCTGCGATGATGATGAAGAGCAGCAAAGTCTGCAACTGA	825	0.5236	MSQRSVPAPFLTKTYQFVDDPATDDVISWSDGGNAFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLSEIKRRKTVTQSSAQVSAAGKSGGGCNSGSNSGGDEMGSTSTSCPDSKNPGTVETTTQQVNLSGENERLRKDNEVLSGELAQAKKQCDELIGFLMEYVKVEPDQIHRIMRQASCGSRHKDDDENAVGEGGEKLKLFGVWLKGEEKTSTRSNKRGREDQIELKAVDFGSPAAMMMKSSKVCN	274

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi05g1591	274	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	214	IPR027725	-
	Glsi05g1591	274	Gene3D	-	2	101	IPR036388	-
	Glsi05g1591	274	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Glsi05g1591	274	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Glsi05g1591	274	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Glsi05g1591	274	MobiDBLite	consensus disorder prediction	104	164	-	-
	Glsi05g1591	274	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Glsi05g1591	274	MobiDBLite	consensus disorder prediction	104	157	-	-
	Glsi05g1591	274	Coils	Coil	159	179	-	-
	Glsi05g1591	274	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Glsi05g1591	274	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Glsi05g1591	274	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Glsi05g1591	274	SUPERFAMILY	"Winged helix" DNA-binding domain	7	99	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi05g1591	Glsi-ChrGlsi05	64265398	64267456	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi05g1591	2	274	HSF	AT4G36990	53.333	2.28e-91	270

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Glsi05g1591		HSF_DNA-bind	5.4e-33	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi05g1591	05	64265398	64267456	Glsi09g0464	09	3216926	3219128	CCT
	Glsi05g1591	05	64265398	64267456	Glsi05g1591	05	64265398	64267456	ECH