Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1585 ATGGTTGATGAAAAGAGCCGGGCATTTGTGGATCGGGTGTTTAAGAAGGAGATAGTGGAACCCAATTATAACCATCACAATAATCGTTACCACGACAGCCTTCGTTGCTCTGTGACTGCCGGAGAAGAGCATGTGGAGCACGAACCGGATGACAGCTTAACTCTGGCCCAATTGTCAAAGATGTCCAAACACAACTCGCCTTCAACCACGGATTTGCAGGGTATCTTTGATTATTTGGTTGTTGTAGTGCTTCAGTTGTCATTGGAGGACAAACGAAACAAGATGATGGAGAATAAATACAAGCTCTTGAACATGAAGAAAAAGCATTTGGATTCTATAACTAAGCAAGCTACATCAGACCAGTCACGAAAGTTTGCAAGCTGCATTAAAGTAGCAACAGATGGGACATTATCTCAAGGTGAGGCCAGGTCATCTGCTGTGATTCGAGCAGAGGAGGTCCGATCAAATTTAGAACCGAAATTCCCTAGCTTTGTGAAGTCATTAGTCAGATCACATGTTGCTAGTTGTTTTTGGATGGGGCTCCCTGGGTTGTTTTGTAAAAGGCACTTACCAGACAAGGATGCAACAATTACTTTGGAAGATGAATCTGGTAAAGAATACAAGTTGAAATACATTGCGTATAAGACAGGTTTAAGTGCTGGTTGGAGACAGTACTCTGTTCTGCACAAATTGCAGGAGGGAGATGTTTTGGTCTTCCAATTAGTTGAACCAACTAAATTTAAGGTATATTATATAGATTTTTTTTTTCTTGTTCTTTTGGTTTATATAATAAGAGCTAACGGATTGAGTGAACTGGATGGGGCTCTTTTCCTTCTGAATTTGGACAGTTATACAAAACAAAAAGAGAGAGGCAAGCCTTATAACGCAAATGCTGATGCTCTACCTACTAATAGCTCAAAGAGGAAACATGCTAAATCTGTCCCACCAGCTGTCCAAAAGAAAAAAAAGATTAGCGTGTCAAGATTGCCTCCCCAGGTTAGGCGGTCTGCAGCACAATCTGAAAGTGAAAGTGAGGAAGTTGGTTCAGAAGTGGTGGAGGGCTTTGAAACAGTACTTAAATTCAAGGATGTAAAATGTTTTGAAAATTTCAGTATCCTAATTGATGGAGTGCCAATAGATACTGAGTTCCCTATCGAGATTCGAAACAAGTACTACGAGCTCTGCTATAGCCAGCATGACTTTCTACATGACAATGTCATCGAGGGCATGAACCATAAGCTAATTGTTGGCATAATATCTGAAATTGTCTGCATTGCTGATGCCATGAGAGTTAGCACACTATATACCTCGCCCATGGAATTTGCTAAATGGGATAAAACGTTGCTAGCCTTTGAGCATCTGGGTATGAATTTGGAATTTTTAAGAGTCCGGTTACGCCGGCTTGTAAGCATTGCCTATGAAACAGAAGATGCCCTGGAGACCAGAAGGTACTTGGAGTCCAGAACTGAACTCAGTCGAGCAGATAATGAGATAAAGAATATTGAAACAAAGCTCGAAGAACTGAAAGGAGCTTGTAATGATTTTGGTGCTTATCTTGGGAGTCTGAAGGACAAAGCTACGATCTACCAGCACAAGTTTCAGCAAGAGGTCACTGCTCCTTGGTAA 1626 0.4127 MVDEKSRAFVDRVFKKEIVEPNYNHHNNRYHDSLRCSVTAGEEHVEHEPDDSLTLAQLSKMSKHNSPSTTDLQGIFDYLVVVVLQLSLEDKRNKMMENKYKLLNMKKKHLDSITKQATSDQSRKFASCIKVATDGTLSQGEARSSAVIRAEEVRSNLEPKFPSFVKSLVRSHVASCFWMGLPGLFCKRHLPDKDATITLEDESGKEYKLKYIAYKTGLSAGWRQYSVLHKLQEGDVLVFQLVEPTKFKVYYIDFFFLVLLVYIIRANGLSELDGALFLLNLDSYTKQKERGKPYNANADALPTNSSKRKHAKSVPPAVQKKKKISVSRLPPQVRRSAAQSESESEEVGSEVVEGFETVLKFKDVKCFENFSILIDGVPIDTEFPIEIRNKYYELCYSQHDFLHDNVIEGMNHKLIVGIISEIVCIADAMRVSTLYTSPMEFAKWDKTLLAFEHLGMNLEFLRVRLRRLVSIAYETEDALETRRYLESRTELSRADNEIKNIETKLEELKGACNDFGAYLGSLKDKATIYQHKFQQEVTAPW 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1585 541 MobiDBLite consensus disorder prediction 290 342 - -
Glsi05g1585 541 Gene3D - 143 254 IPR015300 -
Glsi05g1585 541 Pfam B3 DNA binding domain 164 249 IPR003340 GO:0003677
Glsi05g1585 541 Coils Coil 484 511 - -
Glsi05g1585 541 ProSiteProfiles B3 DNA-binding domain profile. 164 255 IPR003340 GO:0003677
Glsi05g1585 541 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 104 266 IPR044837 -
Glsi05g1585 541 SMART B3_2 164 258 IPR003340 GO:0003677
Glsi05g1585 541 SUPERFAMILY DNA-binding pseudobarrel domain 157 253 IPR015300 -
Glsi05g1585 541 CDD B3_DNA 162 253 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1585 Glsi-ChrGlsi05 64241530 64245157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1585 141 250 B3 DNA Binding Superfamily AT5G42700 51.818 2.08e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi05g1585 B3 5.1e-14 CL0405