Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1567 ATGCGTTGGTTACCTTCCATTTCCTTTTCCCATTCTTCTTCTAATTCTGCTAATCTCAAATCCTCCTCTTCCTCTTCCTCATTCCCCGCCCCTGAAGTTGACCATCCTAGGAAGAAATCCGCCGAAGCCACTCGCGGTTGGCGTTTCGGTACTGGCAAAAAGTTTACCCGCCCCAGGAAGCTCCGACCTATAGCCGACCACGATGGCAAGTTCCCTCTTACGTGGCAAGACTCCGATGAAGACGCCCTTATGCCTTTGTCTCATTCCCCCAACTCCTTTGACCGCGGCAACATTCGTACGAGTACATCCTCCGCCTCCTCTTCCTCCTCGGTCGCGCCTCAACCGTTGCCCTTGCCCGAATTAGCCTCCTCCGCGTTGCTTCGGCCGAAAGACGGCGACTGCCCTTTGCCTTCCCCGAAAGATGTGCCTGGGCCCAGCAGCGGCGGGAGAGGGGTCGACGAGCGTGATAGAGCTGATGGCGTTCTGGACGGAGTCTCCTCTGGCTTTCGAATTCGGAGTGTTTTCGCTAGCCAAGACACAAGAAGGAATATGGAGCCCGTGGAAACAAGGTCATCAAAGATGGTTCATCAAGATCTGAGTGGGGCTGAAAGCACTCGACGTAACTTCTTCATCAGCGTCCCAACTAGGAGTGCTCCAAGTAGTCCTTTGGGCAGTCCCTTAGTCAGCCCAAACAAAACAAAAAATGGTGATTTTGTTCCATATTATTATGTGAGTCCCAAAGCAAATAAATTCTGGTCTGCACCAGAGATGCCCACCTCCGAAGCGTTATCAGGGACGCCACATCATGCATTCTTTGATTTAAATGCATTAGGCCCTGATACTTCTCCCCTTCACAGTCCAGGGGGCATAAGTCCTCGGCGAAACCCCAGAAGCTCAAGTGGTGCTTCGTCGCCCATACATCCCAGGTTATCCCTCGAGAGCACAACAGCGCGTCGTGAAATCAATGCCCCTATTAGTGTTCACCCCTTACCCCTGCCTCCTGGGGCAGCTTTGCCTTCCCCATCTCCTAAATTTTCCCAAACTGCGGCTAAGTCAGAGTGCTCGTCAATGAATAACCAATGGCAGAAAGGGAAACTAATTGGGCGTGGTACATTTGGAAGTGTTTATGTTGCCACCAATCGAGAGACCGGAGCATTATGTGCGATGAAGGAAGTAGAAATATTTCCTGATGACCCAAAATCTGGAGAGTGTATAAAGCAATTAGAGCAGGAAATCAAAGTTCTTAGCCAGCTGAAACATCCAAACATTGTTCAGTATTATGGAAGTGAAATTGTTGAAGACCGGTTTTATATTTATCTCGAATATGTCCATCCTGGATCAATTAATAAATATGTCCGTGAACATTGCGGTGCCATAACAGAATCTGTTGTTCGAAATTTTACTCGCCATATTCTTTCAGGGCTGGCTTACTTGCATAGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGATTCTGCTGGGGTTGTTAAGCTTGCCGACTTTGGGATGGCCAAGCATCTTACTGGATATGTAGCTGATCTTTCTTTAAAGGGAAGTCCATACTGGATGGCTCCAGAGCTTATGCAGGCAGTGATGCAAAAAGATAACAGCTCTGATCTAGCTTTTGCTGTTGATATTTGGAGTTTGGGTTGTACAATCATAGAAATGCTCACAGGGAAGCCTCCTTGGAGTGACTACGAAGGAGCTGCGGCTATGTTTAAGGTTATGAGGGATACACCTACTATACCTGAAACATTGTCACCAGAGGGTAAAGATTTCCTGAGGTGCTGCTTTAAGAGAAATCCAGCAGAGCGATCAACTGCTTCAGTGTTACTAGAACATCGATTTTTGAAAAATGCTCTACAGTCAGATGTTTCATCTTCCACACAGCCTTATAATGGAATAACCTTGATGGACAAACCCCTCAAGGTGACTAGATTGGGCAAAATTCTCACTTCTTTTGACTTAACAGTGGTATCAAGGTGCTTCCTTGCCCCACCCTTGAGCACTTTGTAA 2031 0.4737 MRWLPSISFSHSSSNSANLKSSSSSSSFPAPEVDHPRKKSAEATRGWRFGTGKKFTRPRKLRPIADHDGKFPLTWQDSDEDALMPLSHSPNSFDRGNIRTSTSSASSSSSVAPQPLPLPELASSALLRPKDGDCPLPSPKDVPGPSSGGRGVDERDRADGVLDGVSSGFRIRSVFASQDTRRNMEPVETRSSKMVHQDLSGAESTRRNFFISVPTRSAPSSPLGSPLVSPNKTKNGDFVPYYYVSPKANKFWSAPEMPTSEALSGTPHHAFFDLNALGPDTSPLHSPGGISPRRNPRSSSGASSPIHPRLSLESTTARREINAPISVHPLPLPPGAALPSPSPKFSQTAAKSECSSMNNQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVEIFPDDPKSGECIKQLEQEIKVLSQLKHPNIVQYYGSEIVEDRFYIYLEYVHPGSINKYVREHCGAITESVVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGYVADLSLKGSPYWMAPELMQAVMQKDNSSDLAFAVDIWSLGCTIIEMLTGKPPWSDYEGAAAMFKVMRDTPTIPETLSPEGKDFLRCCFKRNPAERSTASVLLEHRFLKNALQSDVSSSTQPYNGITLMDKPLKVTRLGKILTSFDLTVVSRCFLAPPLSTL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1567 676 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524
Glsi05g1567 676 SMART serkin_6 361 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1567 676 Gene3D Transferase(Phosphotransferase) domain 1 357 645 - -
Glsi05g1567 676 MobiDBLite consensus disorder prediction 274 311 - -
Glsi05g1567 676 Pfam Protein kinase domain 362 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1567 676 MobiDBLite consensus disorder prediction 1 162 - -
Glsi05g1567 676 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 6 634 - -
Glsi05g1567 676 MobiDBLite consensus disorder prediction 181 201 - -
Glsi05g1567 676 FunFam Mitogen-activated protein kinase kinase kinase 5 358 655 - -
Glsi05g1567 676 MobiDBLite consensus disorder prediction 90 114 - -
Glsi05g1567 676 ProSiteProfiles Protein kinase domain profile. 361 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1567 676 MobiDBLite consensus disorder prediction 59 75 - -
Glsi05g1567 676 MobiDBLite consensus disorder prediction 292 311 - -
Glsi05g1567 676 SUPERFAMILY Protein kinase-like (PK-like) 347 650 IPR011009 -
Glsi05g1567 676 MobiDBLite consensus disorder prediction 1 30 - -
Glsi05g1567 676 MobiDBLite consensus disorder prediction 325 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1567 Glsi-ChrGlsi05 64096417 64100926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1567 1 644 MAP Kinase Kinase Kinase AT5G66850 54.252 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi05g1567 Pkinase 8.7e-67 CL0016