Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1555 ATGAAGAATACAAAGCATGACGACGGAAGCTGCAGTGAAAATTTTAGCAATATCTGGAATTGGAATTTTCGTAAAAAAGACGAAATGAGAGAGGGAGCCCTGGGAAAGCTGCAGTGCCGGATAAGGGGAGACACGAGGAGGGGCCCATATGAGAATGTAAAACAGTATTTTGATATTACAGTTAGGACTTGGGAGTGCTGTACTATAAGACTTTACCAAATTCCCTCTTCAAGATCTACAAAGATAAAGAAGATGATCCAGGAACTGTTGAGTGATGCTGGCCTAATAGCAGGGGAAACCAAAATCTCCATTAACGGAGGAGTTTTAGTACCGACATCATCTTCTTCTTTCCCTCCTTCTCCATGTCCTTCTTCCACTACCACTACCACCGGTAATTCCACTGCTAGCACCACCACCGCTGCCACCGCTGCCGCCGCCTCTGAAAACCAAAATCTGAGGTGCCCACGATGTGATTCTTCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCCCGCCACTTCTGCAAGACATGTCGTCGTTACTGGACCAAAGGTGGTGCTCTGAGGAACGTTCCAATCGGAGGGGGTTGTCGTAAAAACAAGAACGTTGGCGTGTCCAACTCTGTCGGAAAGACCAGTGTGGCTAAGATGAAAACAGTTGCATCTGAGCTTGAAAGGTCAGTGCTTGGGGCTGGGTTCGATCACGACCTTCAACCCAGCCCAATCCTATGGGGTTCACCCCAAAATTCTCATCTGTTGGCTTTGCTGAGAGCTAGCCAAAACCAAAACCCTAACCCTAACCCTAACCCTAATCCCATGTCTAATGCTCTTACTGTCAAGGAAGAAGGGAACTTGATGAGCCCCCACGCGGTGAGGGAGCCAATGGTTGCAAATGGGTTACTAAATGGTCGAACTCTAGGCTTTGATCCTGCTGGGCAATTTCCTTCACTTGGTTTGGGCTGCTCTATTTGGAGAAACACTCAAGATCAACCTCAACAACAAGGTGCTGGATTTTCAGTTGGACAACATCAAAACAGTGGAATTCAAGAACTCTACCAGAGGCTCAGATCATCATCAGCTAATTATTGTAGCGACAACTCACAAGTGTTTCTGGGCAACATGGCTTCTTCCTCTACTTTATCCATATTGGAGTCAGCTCCAGCAGCGGGAGATGAATTGGGGTACTGGAATCCAACCCTTCCGTGGTCTGATCTTCCCACAACCAATGGTGCATATCCTTAA 1254 0.4681 MKNTKHDDGSCSENFSNIWNWNFRKKDEMREGALGKLQCRIRGDTRRGPYENVKQYFDITVRTWECCTIRLYQIPSSRSTKIKKMIQELLSDAGLIAGETKISINGGVLVPTSSSSFPPSPCPSSTTTTTGNSTASTTTAATAAAASENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNVGVSNSVGKTSVAKMKTVASELERSVLGAGFDHDLQPSPILWGSPQNSHLLALLRASQNQNPNPNPNPNPMSNALTVKEEGNLMSPHAVREPMVANGLLNGRTLGFDPAGQFPSLGLGCSIWRNTQDQPQQQGAGFSVGQHQNSGIQELYQRLRSSSANYCSDNSQVFLGNMASSSTLSILESAPAAGDELGYWNPTLPWSDLPTTNGAYP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1555 417 MobiDBLite consensus disorder prediction 113 135 - -
Glsi05g1555 417 ProSitePatterns Zinc finger Dof-type signature. 154 190 IPR003851 GO:0003677|GO:0006355
Glsi05g1555 417 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 142 344 IPR045174 GO:0003700|GO:0006355
Glsi05g1555 417 ProSiteProfiles IQ motif profile. 30 58 IPR000048 GO:0005515
Glsi05g1555 417 ProSiteProfiles Zinc finger Dof-type profile. 152 206 IPR003851 GO:0003677|GO:0006355
Glsi05g1555 417 Pfam Dof domain, zinc finger 150 206 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1555 Glsi-ChrGlsi05 63985907 63990031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1555 112 205 C2C2-Dof Transcription Factor Family AT5G65590 60.000 6.33e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi05g1555 zf-Dof 4.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1555 05 63985907 63990031 Glsi05g1555 05 63985907 63990031 ECH