Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1549 ATGCCTTCAGACTCCGGCGACAACCGCCGACCATCCAAACCCCAACACCCGGGAGCTCCGCCGCCAGAACAAGAGCATCTCCCATGCCCTCGTTGCGACTCCACCAACACCAAGTTTTGTTACTACAACAACTACAACTTCTCCCAACCCCGCCATTTCTGCAAGGCCTGCCGCCGCTACTGGACACATGGTGGCACGCTCCGTGACATCCCCGTTGGAGGTGGCAGTCGTAAAAATGCCAAACGCTCCCGTACTACTTCTGCAACTTCGTCCGCCCCCATGACTTCGGCTTCCACGCAGGAACTTCCACTGCCTCCAAACCCTGTGTTGGTACCCATCGCACTCAACCAAGAAGCGTCCTTGCAGTTCGGGCCTCCCAGTGGAGTTGACGGTGACGATGGCAAGCCTAACATAAGTATGGGTGGAAGCTTTACTTCCTTGCTTAGCAACACACAAGGACCTGGATTTCTGGCTCTGGGTGGGTTTGGGCTTGGACTTGGACATGGGTTTGAAGATACGGGATATGGAATTAATGGGAGAGGAGGTTGGCCTTTTCCGGGAATGGTAGATGGCAGTGCTAACGTTGGTGGGGGTGGTATTGGGGCTCCTGTTGTGGGAAATTCATGGCAACTAGACGGTGGAGAAGGTGGTTTCGTGGGTGGAGAGCGCTTCTCTTGGCCGGGACTGGCCATTTCAACACCTGGAAATTGTCTGAAATGA 720 0.5486 MPSDSGDNRRPSKPQHPGAPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPVGGGSRKNAKRSRTTSATSSAPMTSASTQELPLPPNPVLVPIALNQEASLQFGPPSGVDGDDGKPNISMGGSFTSLLSNTQGPGFLALGGFGLGLGHGFEDTGYGINGRGGWPFPGMVDGSANVGGGGIGAPVVGNSWQLDGGEGGFVGGERFSWPGLAISTPGNCLK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1549 239 Pfam Dof domain, zinc finger 25 81 IPR003851 GO:0003677|GO:0006355
Glsi05g1549 239 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
Glsi05g1549 239 MobiDBLite consensus disorder prediction 1 29 - -
Glsi05g1549 239 MobiDBLite consensus disorder prediction 79 103 - -
Glsi05g1549 239 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 148 IPR045174 GO:0003700|GO:0006355
Glsi05g1549 239 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Glsi05g1549 239 MobiDBLite consensus disorder prediction 68 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1549 Glsi-ChrGlsi05 63936544 63937263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1549 1 239 C2C2-Dof Transcription Factor Family AT3G50410 51.737 6.57e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi05g1549 zf-Dof 3.1e-33 No_clan