Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1525 ATGGAAGTGCTTCCGTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCCCTCAGCAGAGCTCAGGAACATCTTTCGTATACCAGGGAGAACCTAATTGCCCTGAAAATGGTGAACAAGTTAAATTGAAGGATGGTCAACTGAATGACTCATCACTTAATAGGGAAGAGCCTCAGATAGAAAGGCAAGGTGAAGGTCAGGAGGCAGTTGGCGAACTGTCAATTAATCAAGATTGGCAATGCAGTGGAGCTTCAAGTTGTGACTGTCAAGTGGTAGACCAGAAGGAATCTTGTGGTTTGCATGGTTTTGATGAGGATGAGATAGATGAACCTTGCCTAACCGCAGAGAACTCTATTCCCTTTGTGGATACAATTGATAGTGAATCTCCAAACAACAGTAGGGATGGAGAGTTGCCACTTTCTGAACCTACTTGGCTAGAGGGAGATGAATCTGTTGCATTGTGGGTGAAGTGGAGAGGGAAGTGGCAGGCTGGCATCAGATGTGCAAGGGCTGACTGTCCTTTATCAACTTTGAAAGCAAAACCGACTCATGACCGGAAGAAATACTTTGTGATATTTTTTCCTCACACAAGGAATTATTCTTGGGCTGACATGATGCTTGTTCGTTCAATCAGTGAGTTTCCCCAGCCTATTGCATATAAGACCCACCAGGTAGGATTGAAAATGGTAAAAGATTTGTCTGTTGCCCGACGGTTCATAATGCAAAAGCTAGCTGTTGGCATGCTGAACATCATTGATCAATTTCATTTCAATGCTTTGATAGAAACTGCACGTGATGTGATGGTCTGGAAGGAGTTTGCTATGGAGGCTTCCCGTTGTAATGGTTATTCTGATCTTGGAAGAATGCTTCTAAAGCTGCAAAATAGCATACTGCAGCGCTACATAAATGCTAACTGGTTACAGCAGTCTCTTCAATCTTGGATTGAACGATGCCAGAATACAAGTAGTGCTGAATCGATAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATATTGTGGAATGATGTCACCACTCTCTGGGATGCACCAGTGCAACCAACATTAGGTTCTGAGTGGAAAACCTGGAAGCACGAAATAACGAAATGGTTTTTTGCTTCTCCTTCCTTATCTAGCAGCAAAGACATACAGCAGCAGATCTCTGATGGCTCCTTCCAAGCAAGCCTCCAAGTTTGTCGAAAAAGGCCCAAGCTTGAAGTTCGTCGTGCAGAAGCACACGCTTCACAAGTGGAAACTAAGGATTCAGATCACTCTATAACTCTTGAAACTGACTTGGGCTTCTTTAATAATCAGGACACATTGAGTACATTAGCAGCCGAGACCTGTAAACAGGAGGATTATAGGGAAGTACCTATCCCAACCGATTCACCAATTAATGTAACCAATAAATGGAATGACATTGTAGTTGAAGCTGCAGATTCTGAGTTCTTGCATAGCAAAGCCATGGAATCAACACCTACAAATGAATTGGTTGGTCCAAAATCTGTAGAACCTGGTAGTAAGAATCGACAATGTATAGCTTTTATTGAAGCCAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTTTACTGTTGTGTGCATTTGTCCTCTCGTTTTTTAGGCAGCTCAGCAAGAGCAGAAAGATCTGTTTCAGTTGATACTCCAATGTGTGAAGGTACAACTGTTCTTGGTACTAGATGTAAGCATCGGGCCCTGCCTGGCTCTTCGTTCTGTAAGAAACACAGGCCCCATGCAGAAGCAGACCACACTTCAAATTTACCCCAGAATTCACTAAAGAGGAAACATGAAGAAAATTATACTGGTTTGGATAGCATGTACTGCAGAGACATGGTTTTGGTAGATGTTGAAAGCCCCCTGCAAGTGGATCCACTGTCAGTCATTGAAGGTGATACGTTGCTTGGAAGCAGTAACTTAAATGAGAAACCCATGCATTTTGGAAATGATCATAATGCAATGGAGGAACTTCACTGTATAGGCTCTTCTCCTTTTGATGACAAGAACCCCTGTTTGGAAACTCCTAAGCGGTATTTTTTGTACTGTGAGAAGCACCTGCCAAGCTGGCTCAAACGTGCAAGAAATGGGAAGAGTAGAATAATATCAAAAGAAGTGTTCACAGAACTTTTGAGGGGATGCTTCTCATGGGAGCAAAAGGTACATCTACATAAAGCATGTGAGCTTTTTTACAAGCTATTTAAAAGCATTTTATCCCTAAGAAACCCAGTTCCTAAGGAAGTTCAGTTCCAGTGGGCTTTGACTGAAGCGTCTAAAGATACTAGTATTGAAGAATTCTTTACAAAGTTGGTTCATGGTGAGAAAGAGAGAATGAAAATGATTTGGGGATTCAATGATGACAAAGATGTATCTTTACTCATGGAAGAACCACCTCTACTGACATCCACAGTTAATGATGGCTTTGATAATGAAAATGTCATAAAATGTAAGATATGCTCCACAGAATTTCCTGATGATCAAGCACTTGGCAGCCATTGGATGGAAAATCATAAAAAGGAAGCGCAGTGGCTGTTTAGAGGTTATGCATGTGCCATTTGCCTAGATTCTTTTACTAATAGAAAAGTCTTGGAAACCCATGTTCAGGAGAGACACCGAGTGCAATTTGTTGAACAGTGCATGCTTCTTCAGTGCATTCCTTGTAGTAGTCATTTTGGAAATACTGAACAGTTATGGATGCATGTTCTGTCAGTTCATCCTTTTGATTTTAAGCAATCAAAAGCTCCTGAGCAGCAAATTTTGTCTACTGGCGAGGACTCTTCAATAAAAACAGAGCAGGGGAATTCAGCCCCTTTGGAGAATAATTCTGAAAATTTAGGTGGTTTGAGGAAGTTCATTTGCAGGTTTTGTGGGTTAAAGTTTGATTTACTACCTGACCTTGGTCGCCATCATCAGGCTGCTCATATGGGACCTAATTTAGTTAGCAGCCATCCCTCAAAGAGGGGAGTTCGTTATTATGCATATAGATTAAAATCTGGCAGACTCAGCCGTCCTAGATTTAAAAAAGGTTTGGCAGCAGCATCATATAGGATCAGAAGTAGGGCTAGTGCTAATTTAAAGAGAAGGATTCAGGCAACAAAGTCGCTTGGAATGGGGGGCATAACTGTACAACCTCATGTAACTGAGACAACAAATATCGCCAGGTTGGCAGAATATCAATGCTCTGCTGTTGCAAAGATTTTATTTTCTGAGATTCAGAAGACTAAACCTCGGCCAAGCAATCTTGATATCATATCAATTTCTCGCTCTGCTTGTTGCAAAGTTAGTCTTATAGCCTCACTGGAGGAGAAATATGGAACTCTGCCTGAAAAGCTGTATCTGAAGGCAGCTAAACTTTGCAGTGAGCACAATATTCTGGTGAACTGGCACCAGGAAGGGTTTAATTGTCCTAGAGGCTGTAAAGTGTTGAAGGACCAACCGTTGCTTTGTCATTTAGCATCTCTTCCTAATGGTTTTGTAAAGCAAAAATCTGTAAATTTATCAGATCCTGCAAGTGATGAGTGTGAGGTGGATGAGTTTCACTACATCATCAATTCACACCATCTAAAACCAGAGTCCTTGCAAAAGGCTGTAGTCTTATGTGATGACATAAGCTTCGGGAAGGAATCAGTTCCAGTGATTTGTGTGGTAGATCAAGAACTTATGAATTCTCTTCATATGTGTGGGTCTAATGTACATGATACACATAATTCTATGCCTTGGGAGAGCTTTACCTATGTTACGAAGCCTATGCTTGATCAATCCCTTAGTCTTGATTCAGAGAGTCTGCAATTGGGATGTGCCTGCTCATATTCTACCTGCAGTCCTGAAACCTGTGATCACGTATACCTTTTTGATAATGACTATGATGATGCAAAGGACATATTTGGGAAACCAATGCGTGGCAGATTCCCATATGATGAGCATGGTCGAATAATCTTGGAGGAAGGTTACCTTGTCTATGAATGCAACCATATGTGTAGATGTAATAAAACCTGCCCAAACAGAATCTTGCAAAATGGAATACGAGTGAAACTGGAAGTTTTTAAAACCGAGAAAAAGGGATGGGCAGTGAGGGCTGGTGAAGCTATCTTGCGTGGCACATTTGTATGCGAGTACATTGGAGAGGTTTTAAATGAGCAGGAGGCACACAACAGGCGCAAGAGATATGGCAAAGAAGCTTGCTGTTATTTCTATGACATTGATGATCATATCAATGATATGAGTAGATTGATTGAAGGACAGGTCCGATATGTAATTGATTCTTCTAGATATGGAAATGTCTCAAGGTTCATCAATCACAGCTGCTCGCCCAATCTTGTGAACCACCAAGTTCTTGTAGAAAGCATGGATTGTGAACGTACACATATTGGTCTTTATGCAAGTAGAGATATTGCTTTGGGTGAAGAACTGACGCATGATTATCGTTATGAACTTGTGCCTGGGGAAGGATCTCCTTGCCTCTGTGGATCTTTGAAGTGCCGGGAACGCCTTCACTGA 4515 0.4164 MEVLPCSGVQYAGESDCPQQSSGTSFVYQGEPNCPENGEQVKLKDGQLNDSSLNREEPQIERQGEGQEAVGELSINQDWQCSGASSCDCQVVDQKESCGLHGFDEDEIDEPCLTAENSIPFVDTIDSESPNNSRDGELPLSEPTWLEGDESVALWVKWRGKWQAGIRCARADCPLSTLKAKPTHDRKKYFVIFFPHTRNYSWADMMLVRSISEFPQPIAYKTHQVGLKMVKDLSVARRFIMQKLAVGMLNIIDQFHFNALIETARDVMVWKEFAMEASRCNGYSDLGRMLLKLQNSILQRYINANWLQQSLQSWIERCQNTSSAESIELLKEELFDSILWNDVTTLWDAPVQPTLGSEWKTWKHEITKWFFASPSLSSSKDIQQQISDGSFQASLQVCRKRPKLEVRRAEAHASQVETKDSDHSITLETDLGFFNNQDTLSTLAAETCKQEDYREVPIPTDSPINVTNKWNDIVVEAADSEFLHSKAMESTPTNELVGPKSVEPGSKNRQCIAFIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSARAERSVSVDTPMCEGTTVLGTRCKHRALPGSSFCKKHRPHAEADHTSNLPQNSLKRKHEENYTGLDSMYCRDMVLVDVESPLQVDPLSVIEGDTLLGSSNLNEKPMHFGNDHNAMEELHCIGSSPFDDKNPCLETPKRYFLYCEKHLPSWLKRARNGKSRIISKEVFTELLRGCFSWEQKVHLHKACELFYKLFKSILSLRNPVPKEVQFQWALTEASKDTSIEEFFTKLVHGEKERMKMIWGFNDDKDVSLLMEEPPLLTSTVNDGFDNENVIKCKICSTEFPDDQALGSHWMENHKKEAQWLFRGYACAICLDSFTNRKVLETHVQERHRVQFVEQCMLLQCIPCSSHFGNTEQLWMHVLSVHPFDFKQSKAPEQQILSTGEDSSIKTEQGNSAPLENNSENLGGLRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVSSHPSKRGVRYYAYRLKSGRLSRPRFKKGLAAASYRIRSRASANLKRRIQATKSLGMGGITVQPHVTETTNIARLAEYQCSAVAKILFSEIQKTKPRPSNLDIISISRSACCKVSLIASLEEKYGTLPEKLYLKAAKLCSEHNILVNWHQEGFNCPRGCKVLKDQPLLCHLASLPNGFVKQKSVNLSDPASDECEVDEFHYIINSHHLKPESLQKAVVLCDDISFGKESVPVICVVDQELMNSLHMCGSNVHDTHNSMPWESFTYVTKPMLDQSLSLDSESLQLGCACSYSTCSPETCDHVYLFDNDYDDAKDIFGKPMRGRFPYDEHGRIILEEGYLVYECNHMCRCNKTCPNRILQNGIRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLNEQEAHNRRKRYGKEACCYFYDIDDHINDMSRLIEGQVRYVIDSSRYGNVSRFINHSCSPNLVNHQVLVESMDCERTHIGLYASRDIALGEELTHDYRYELVPGEGSPCLCGSLKCRERLH 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1525 1504 SMART c2h2final6 854 877 IPR013087 -
Glsi05g1525 1504 SMART c2h2final6 888 911 IPR013087 -
Glsi05g1525 1504 SMART c2h2final6 820 843 IPR013087 -
Glsi05g1525 1504 SMART c2h2final6 957 980 IPR013087 -
Glsi05g1525 1504 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1504 - -
Glsi05g1525 1504 Gene3D SET domain 1185 1485 IPR046341 -
Glsi05g1525 1504 ProSiteProfiles Zinc finger C2H2 type domain profile. 854 877 IPR013087 -
Glsi05g1525 1504 MobiDBLite consensus disorder prediction 49 63 - -
Glsi05g1525 1504 MobiDBLite consensus disorder prediction 926 947 - -
Glsi05g1525 1504 SUPERFAMILY SET domain 1198 1494 IPR046341 -
Glsi05g1525 1504 SMART preset_2 1206 1333 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi05g1525 1504 ProSiteProfiles Pre-SET domain profile. 1270 1346 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi05g1525 1504 ProSiteProfiles SET domain profile. 1349 1481 IPR001214 GO:0005515
Glsi05g1525 1504 ProSiteProfiles Zinc finger C2H2 type domain profile. 957 985 IPR013087 -
Glsi05g1525 1504 SMART set_7 1349 1487 IPR001214 GO:0005515
Glsi05g1525 1504 ProSitePatterns Zinc finger C2H2 type domain signature. 856 877 IPR013087 -
Glsi05g1525 1504 ProSitePatterns Zinc finger C2H2 type domain signature. 890 911 IPR013087 -
Glsi05g1525 1504 MobiDBLite consensus disorder prediction 1 66 - -
Glsi05g1525 1504 Pfam Zinc finger C2H2-type, 3 repeats 856 981 IPR040689 -
Glsi05g1525 1504 ProSiteProfiles Post-SET domain profile. 1488 1504 IPR003616 -
Glsi05g1525 1504 ProSitePatterns Zinc finger C2H2 type domain signature. 822 843 IPR013087 -
Glsi05g1525 1504 Gene3D Classic Zinc Finger 814 886 - -
Glsi05g1525 1504 MobiDBLite consensus disorder prediction 13 31 - -
Glsi05g1525 1504 ProSitePatterns Zinc finger C2H2 type domain signature. 959 980 IPR013087 -
Glsi05g1525 1504 Pfam SET domain 1360 1480 IPR001214 GO:0005515
Glsi05g1525 1504 Pfam Pre-SET motif 1209 1341 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1525 Glsi-ChrGlsi05 63794218 63804058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1525 135 1503 C2H2 Transcription Factor Family AT2G23740 52.844 0.0 1414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi05g1525 Pre-SET 5.1e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1525 05 63794218 63804058 Glsi05g1525 05 63794218 63804058 ECH