Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1520 ATGGGTTGGTTTACCAAGCTTCTCAAGGGCTCCAACCATAAAATGTCAGGAGGACAATATCATGGGCAACATGGAGCTGAAAGAATTAGGGATAATCATCGTAATTCAGTGGATGAATTGACGGATATTGAGAAAGAAGACATTGATTGTGCAATTGCACTCTCTCTATCAGAGGAGGATCAGAAAAGGAAAAATGATATTGAGGATGATTCACAATCTGAAGATGATGAAGAACTTTGTAAAATTCAAGAGGAGGAAGATGAGCACCTTGCTAATGTTCAAGAAGAGGAGGATGAGCATCTTGTTAAGATTCAACCAAAAGAAGATGAACATCTTGCTGAAGTTCAACTTGAGGAAGATGAACAATTCGCCAGGGCACTGCAAGAAAGTTTGAAAGTGGATTCTCCTCCTCAATATGACCCCGGGTCTTTCTTTGAACCTTATCCACTCCCCTATTCACCTGGCTACAGGATCTGCGGTGGCTGCAACACTGAGATTGGCCATGGAAGATTCTTAAGCTGTATGGGAGCAGTCTGGCATCCAGAATGTTTTCGTTGCCACGCTTGCAATCTGCCAATCACTGATTATGAGTTTTCCATTTCTGGCAATCGCCCTTACCATAAATCCTGCTATAGGGAGCAGCATCACCCAAGATGTGATGTTTGCAAAAATTTTATCCCCACAAATTCAGCTGGCCTCATTGAGTATAGAGCGCATCCTTTCTGGCTACAAAAATACTGTCCATCGCATGAGCTTGATGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCGTGTGACACGAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCTGCAATTATGGATACTCATGAATGCCAACCTCTTTACCTTGAAATTCAAGAATTTTATGAAGGGTTAAATATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTTGAAAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTGCCGGAAACCAGAGGACTATGCTTGTCAGAAGAGCAGACAGTCACCACTATTTTAAGGAGACCGAAGATAGGGTCAGGCTACAGAGTTATAGACATGATAACCGAGCCATATAGGTTGATCCGTCACTGTGAAGTGACTGCCATTCTAGTTTTGTATGGCCTTCCCAGGTTGTTGACAGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTCAGGCTTAATGGTTATCCCAATCTGAGCCCAGAAGTTGAAGAAGGAATTTGCCAAGTGTTAGGTCATATGTGGTTAGATTCAGAGATCTATTCTGGATCTGGGAATGATGGTGCATCTTCATCCTCCGCCTCCTCATCTTCATCTTCTTCCACGTCATCAAAGAAGGGGAAACGTTCTGATTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCATCAGCTTACGGAGAGGGATTCAAATTGGGAAACCAGGCTGTGCTCAAGTACGGGCTCAGAAGGACTCTCGACCATATCCGGATAACAGGAAGTTTCCCATAA 1575 0.433 MGWFTKLLKGSNHKMSGGQYHGQHGAERIRDNHRNSVDELTDIEKEDIDCAIALSLSEEDQKRKNDIEDDSQSEDDEELCKIQEEEDEHLANVQEEEDEHLVKIQPKEDEHLAEVQLEEDEQFARALQESLKVDSPPQYDPGSFFEPYPLPYSPGYRICGGCNTEIGHGRFLSCMGAVWHPECFRCHACNLPITDYEFSISGNRPYHKSCYREQHHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPCDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPKIGSGYRVIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLNGYPNLSPEVEEGICQVLGHMWLDSEIYSGSGNDGASSSSASSSSSSSTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGEGFKLGNQAVLKYGLRRTLDHIRITGSFP 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1520 524 SMART uim 118 137 IPR003903 -
Glsi05g1520 524 SMART uim 43 62 IPR003903 -
Glsi05g1520 524 Pfam LIM domain 159 214 IPR001781 -
Glsi05g1520 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 240 - -
Glsi05g1520 524 Gene3D Cysteine Rich Protein 154 218 - -
Glsi05g1520 524 ProSiteProfiles LIM domain profile. 157 217 IPR001781 -
Glsi05g1520 524 MobiDBLite consensus disorder prediction 8 33 - -
Glsi05g1520 524 SMART lim_4 158 210 IPR001781 -
Glsi05g1520 524 FunFam Protein DA1-related 1 153 212 - -
Glsi05g1520 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 184 - -
Glsi05g1520 524 MobiDBLite consensus disorder prediction 449 471 - -
Glsi05g1520 524 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 118 137 IPR003903 -
Glsi05g1520 524 MobiDBLite consensus disorder prediction 56 78 - -
Glsi05g1520 524 ProSitePatterns LIM zinc-binding domain signature. 159 193 IPR001781 -
Glsi05g1520 524 Pfam Protein DA1 308 519 IPR022087 -
Glsi05g1520 524 CDD LIM_DA1 159 211 - -
Glsi05g1520 524 MobiDBLite consensus disorder prediction 449 467 - -
Glsi05g1520 524 PANTHER PROTEIN DA1-RELATED 2 3 524 IPR045218 -
Glsi05g1520 524 Coils Coil 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1520 Glsi-ChrGlsi05 63751256 63755474 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi05g1520 DA1-like 1.9e-105 CL0126