Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1516 ATGCGTTTCTTTCCCTTCATTCCCGTCTTCTCTTTGGCCTTACTCTGTAGCTTTTCTTTGATTCTGGGGCAGCAACCTTATATTGGTAAGGGCACAACAGCCTGTCCTAGGAAGGGCAATTCAAAATCTATTCGTGGTTACACTTGCAACGGCATTAATCATAGTTGCCAAGCTTACCTCACCTTCAGATCTCAACCCCTTTACAGCTCTGTTTCCACAATTTCTGCTTTGTTGGGTATTGACCCATCTCACTTTTCTCAAATAAACTCAGTTTCTCAGAATGCCACCTTCGAAACAAATAAGTTGCTGATTGTTCCAGTCAACTGCTCTTGTGCAGGTAATCAGTATTATCAGGCAAACACATCCTACATAATCCACAATACGGACACCTATTTTTTGATTGCTAACAACACTTTTGAAGGCCTCTCAACATGTCAAGCTCTGATGGATCAAAACGACATTCCTGGAGATCTATTCCCTGGTACAAAACTTGATGTTCCTCTTAGATGTGCTTGCCCCACAAAGAATCAAACTGACAAAGGTGTCAAGTACCTATTGAGTTACTTAGTAGACTGGGGTGATTCTGTTTCGCGCGTTAGTCGAAGATTTGGTGTCCTTACTGATACCACTCTTGAAGCTAATACCCTTTCCTATGAAGATGCCACCATATATCCCTTTACCACACTTTTAGTGCCCCTTCAAGATAAACCCTCCAGTTCCCAAACTGTTCTGCCTCCTTCACGTCCTCCGCCACCCTCGCCTCCCTCTTCTTCCTCTGTTGGACCCTCAAAAAAGACGTGGGCATATGCACTTGCTGGAGTTGTTGGAGGAATTGCTTTACTATCAGTCCTCGGCATCATCATTTTCCGCACGCGCAATCGCAAAATTAAAAGGAAAGATGACTCTGTCATTGTGTCCAGGAGTTTTGAGGCAATTGAGAAACCCGAAGGGAAAAAAGTCGAGGAAGGGTCAGAAACGTTGTCAGAGATAATATCCGGCATAGCTCAGTCTTTCAAAGTGTACGGTTTTAAGGAACTAGAGCGTGCAACGGATAATTTTAGTCCGAGCTGCTGGATTAAAGGATCTGTCTATCGCGGTGTTATTAATGGTGATTTGGCTGCAATTAAAAAGGTGGACGGAGACGTGTCGAAAGAGATACAAATTCTGAACAAAGTCAACCATTCACATGTGATACGCCTTTCTGGGGTTAGCTTTAACGAAGGCCATTGGTATCTGGTTTATGAGTATGCTGCTAATGGACCCTTGAGGGACTGGATCTACTTCAACAACGTCGATGGAAAGTTTCTGACTTGGATGCAGAGATTACAGATTGCATTGGATGTGGCTACAGGACTTGACTATCTCCATAGTTTCACTTCTCCTCCTCATATCCACAAGGATCTTAAGAGTGATAACGTTCTTCTGGATACTAATTTCAGGGGGAAAATTGCAAACTTACGCCTTGCAAGGTCTGTGGAAGGAGAGGATGACCAATTTCCCATGACGAGGCATATTGTTGGAACAAGAGGTTACATGGCTCCTGAGTATTTAGAAAATGGTCTAGTTTCCACAAAGCTAGACGTGTATGCATTTGGGGTTCTGATGCTGGAAATATTGACTGGGAAAGAGGCTGCTGCTATTTATGCAGAAGATAAGACGAATCTGTCAAATGTTTTGAGCGTCATACTTGGTGAGGAAAGTGGGCAGGAGAAGTTGAGGGATTTTATGGATCCTTCCCTGCAAGAAAATTATCCAGTGGAACTTGCAATGTTTGTAATTAGATTGATTGATAATTGCATAAAGAAAGATCCATCAAGTCGCCCTGCCATGCATGAAATTGTGCCGTCTCTGTCTGTAACCTTGAACTCTTCATTGGCCTGGGAAACGTCAGTAAACATCTCAGGACAACAATCTTAA 1917 0.4309 MRFFPFIPVFSLALLCSFSLILGQQPYIGKGTTACPRKGNSKSIRGYTCNGINHSCQAYLTFRSQPLYSSVSTISALLGIDPSHFSQINSVSQNATFETNKLLIVPVNCSCAGNQYYQANTSYIIHNTDTYFLIANNTFEGLSTCQALMDQNDIPGDLFPGTKLDVPLRCACPTKNQTDKGVKYLLSYLVDWGDSVSRVSRRFGVLTDTTLEANTLSYEDATIYPFTTLLVPLQDKPSSSQTVLPPSRPPPPSPPSSSSVGPSKKTWAYALAGVVGGIALLSVLGIIIFRTRNRKIKRKDDSVIVSRSFEAIEKPEGKKVEEGSETLSEIISGIAQSFKVYGFKELERATDNFSPSCWIKGSVYRGVINGDLAAIKKVDGDVSKEIQILNKVNHSHVIRLSGVSFNEGHWYLVYEYAANGPLRDWIYFNNVDGKFLTWMQRLQIALDVATGLDYLHSFTSPPHIHKDLKSDNVLLDTNFRGKIANLRLARSVEGEDDQFPMTRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVLMLEILTGKEAAAIYAEDKTNLSNVLSVILGEESGQEKLRDFMDPSLQENYPVELAMFVIRLIDNCIKKDPSSRPAMHEIVPSLSVTLNSSLAWETSVNISGQQS 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1516 638 Gene3D LysM domain 186 244 IPR036779 -
Glsi05g1516 638 MobiDBLite consensus disorder prediction 243 258 - -
Glsi05g1516 638 Gene3D Phosphorylase Kinase; domain 1 326 416 - -
Glsi05g1516 638 FunFam PTI1-like tyrosine-protein kinase 3 417 631 - -
Glsi05g1516 638 SUPERFAMILY Protein kinase-like (PK-like) 336 617 IPR011009 -
Glsi05g1516 638 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 630 - -
Glsi05g1516 638 Pfam Protein kinase domain 370 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1516 638 ProSiteProfiles LysM domain profile. 186 231 IPR018392 -
Glsi05g1516 638 MobiDBLite consensus disorder prediction 237 261 - -
Glsi05g1516 638 Pfam LysM domain 192 232 IPR018392 -
Glsi05g1516 638 CDD TM_EGFR-like 272 299 - -
Glsi05g1516 638 Gene3D Transferase(Phosphotransferase) domain 1 418 631 - -
Glsi05g1516 638 ProSiteProfiles Protein kinase domain profile. 298 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1516 638 SMART serkin_6 358 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1516 Glsi-ChrGlsi05 63723574 63725490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1516 1 630 Receptor kinase-like Gene Family AT2G23770 45.696 1.13e-175 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Glsi05g1516 Pkinase 1.3e-37 CL0016