Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1514 ATGGCTTCTCAAAGCTTCAATTCCCTCCTCTGGCACTTTCTTTTGGCTATTGCAATTGTCATCCTTTTCTCTCCAAACCTTAGTAGTTCTGCCAAGCAATCCAAGGTAATCGGGTTGAAAATGAATGTGATCGATCAATGCTGGAGATGGAACCCAGAATGGCGGAGACACCGCCCACAACTTGCCACCTGCTCTGTGGGCTATGCAGGGAAGATGACTAATAACATCGGAAAAGACCTCATCCACTATAAAGTCACCGATCCTAGTGACGACCCGATAAACCCCAAACCTGGGACCTTGAGATATGGAGCTTCCATGATTGAAGGGAAAGTGTGGATCACATTCAAAAGAGACATGAACATTAAGCTGGAGAGACCCCTTCTGATTAGCAGCTTCACCGCCATTGATGGCCGTGGCGTCAACGTTCACATTGCTCATAATGCATGCTTGATGATCTTTAAGGCGACCAACATAATCATCCACGGCATTCGGATCCATCACTGCAGGCCTCAGTCTGCTGGGATGGTGATGGGTCCTAATGGGAAGGTAATTTCAGTGGGTCAGGTAGATGGGGACGCTATCAGGTTGGTGACGGCCTCAAAGGTTTGGATTGACCATAATACGCTGTACGACTGCCAAGATGGGCTTCTGGATGTCACGCGGGGTTCCACCGATGTGACCGTCTCCAACAATTGGTTCAGAGACCAAAACAAGGTTATGCTTCTCGGGCACGATGATGGGTACCAGAGAGACCAGAACATGAAGGTCACCGTTGTGTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCCAGGATTCGGCATGGATACGCACATGTAGCCAACAATCTGTACCGAGGATGGGTGCAGTACGCGATTGGTGGAAGCATGGAACCCAGCCTCAAGAGCGAAGCCAACCTCTTTATAGCACCGATATCTGGGAGTAAAGAGGTGACATGGAGAAAAGGGAATAATGGAAACGGGGACGCATGGGAATTTCATTCGGTGAGAGATGTGTTTGAAAACGGAGCTTCCTTCACGGAAACAACAGGAGGACGTGTGCCGAAGCCCAATTATAACAACGAACAGAAATTTCAAGTTGCAGATGCCCAAGCTGTGAGGTCATTGACAAGATCATCAGGCGCATTACGATGCACCGAGACCTCAAGATGCTGA 1179 0.4869 MASQSFNSLLWHFLLAIAIVILFSPNLSSSAKQSKVIGLKMNVIDQCWRWNPEWRRHRPQLATCSVGYAGKMTNNIGKDLIHYKVTDPSDDPINPKPGTLRYGASMIEGKVWITFKRDMNIKLERPLLISSFTAIDGRGVNVHIAHNACLMIFKATNIIIHGIRIHHCRPQSAGMVMGPNGKVISVGQVDGDAIRLVTASKVWIDHNTLYDCQDGLLDVTRGSTDVTVSNNWFRDQNKVMLLGHDDGYQRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYRGWVQYAIGGSMEPSLKSEANLFIAPISGSKEVTWRKGNNGNGDAWEFHSVRDVFENGASFTETTGGRVPKPNYNNEQKFQVADAQAVRSLTRSSGALRCTETSRC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1514 392 SUPERFAMILY Pectin lyase-like 41 383 IPR011050 -
Glsi05g1514 392 PANTHER PECTATE LYASE 18-RELATED 38 389 IPR045032 GO:0030570
Glsi05g1514 392 SMART amb_all 118 315 IPR002022 -
Glsi05g1514 392 Pfam Pectate lyase 132 309 IPR002022 -
Glsi05g1514 392 Gene3D - 41 385 IPR012334 -
Glsi05g1514 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Glsi05g1514 392 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Glsi05g1514 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Glsi05g1514 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Glsi05g1514 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Glsi05g1514 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Glsi05g1514 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1514 Glsi-ChrGlsi05 63715361 63716785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1514 72 324 Polysaccharide Lyase AT5G09280 72.332 2.45e-145 412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1514 05 63715361 63716785 Glsi05g1514 05 63715361 63716785 ECH