Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1490 ATGAATCCTAATCCTATTGAAGATCATGTGGTGCTCATCTCTCAGCTATACGCAGGTGCATACACTCAAATAATTCCTCAACAAGGGGAAACAAAGCCAAGACGACGACGCAAGAAGAACAAAGGAGGAGAAAACGGAGCTGGGGATGTTAAGAAGAGGAAGCTTAGTGCAGAGCAAGTTAATCTTCTGGAGTTAAACTTTGGTAGTGAACATAAATTAGAGTCTGAAAGGAAGGACCGGCTCGCGTCGGAACTTGGCTTGGATCCACGTCAAGTCGCCGTGTGGTTCCAAAACCGAAGGGCCCGTTGGAAGAACAAGAAGTTGGAAGAAGAGTACTCCAGCCTTAAGAAAGCCCACGAAACCACCATTATCGAGAAATGCCGCCTTGAAACCGAGGTACTGAAGCTGAAGGAACAGCTGCGTGAATCAGAGAAAGAGATACAAGGGCTACTGGAGCGAGTGTCAAGCAACAGCCCAAGTACCTCATCACAGTCAATGGAGGCAGTGGACCCACCATTTCTCGGAGAGTTTAGAGTGGAGGGATACGATGATGATGTGTTTTACATGCCGGAAACCTACATCAATGGCATGGACTGGATATACATGTGA 609 0.4713 MNPNPIEDHVVLISQLYAGAYTQIIPQQGETKPRRRRKKNKGGENGAGDVKKRKLSAEQVNLLELNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKAHETTIIEKCRLETEVLKLKEQLRESEKEIQGLLERVSSNSPSTSSQSMEAVDPPFLGEFRVEGYDDDVFYMPETYINGMDWIYM 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1490 202 Coils Coil 133 153 - -
Glsi05g1490 202 ProSitePatterns 'Homeobox' domain signature. 81 104 IPR017970 GO:0000981|GO:0006355
Glsi05g1490 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 163 IPR045224 GO:0003700
Glsi05g1490 202 CDD homeodomain 51 107 IPR001356 GO:0003677
Glsi05g1490 202 PRINTS Lambda-repressor HTH signature 86 102 IPR000047 GO:0003677
Glsi05g1490 202 PRINTS Lambda-repressor HTH signature 77 86 IPR000047 GO:0003677
Glsi05g1490 202 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
Glsi05g1490 202 SMART HOX_1 49 110 IPR001356 GO:0003677
Glsi05g1490 202 MobiDBLite consensus disorder prediction 24 53 - -
Glsi05g1490 202 Coils Coil 98 125 - -
Glsi05g1490 202 SUPERFAMILY Homeodomain-like 50 115 IPR009057 -
Glsi05g1490 202 Gene3D - 42 114 - -
Glsi05g1490 202 Pfam Homeodomain 52 105 IPR001356 GO:0003677
Glsi05g1490 202 FunFam homeobox-leucine zipper protein ATHB-40 45 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1490 Glsi-ChrGlsi05 63520017 63521723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1490 1 200 Homeobox Transcription Factor Family AT2G18550 56.881 2.86e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi05g1490 Homeodomain 3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1490 05 63520017 63521723 Glsi09g0538 09 3720621 3723766 CCT
Glsi05g1490 05 63520017 63521723 Glsi05g1490 05 63520017 63521723 ECH