Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1489 ATGCAACAGGACAAAGCTGCTCCAGCTATGGTCGAGAAACATGCAGTGCTCTCAGACACTGAGCTCCTTTTCCAGCTCTCACTCACTTACTCCCTAGACAACAGCGGAGACAATCACGCTGTTGATTTTAAGGATGATTTTGTCTTCAATATCGATCCTAGCTTGCTAGTAGACTCTGCCAAAGTCAAAATTGGTCAAATGATCGGAGAAGGGCCTCACTCCATTGTCTATGAAGGATGGTATGAATCCAAGCCCGTGGCTGTAAAGGTTATACTTCCAAACAGAACATCTCAAGCAACTCCGGAGTGTAAGGAGAAATTCCAAAGGGAGGTTATGTTGCTCTCTAAGATAAAGCATGAAAATATTGTGGAGTTTATTGGTGCCTCAGTGGAACCAGCGATGATGATAATCACAGAACTTATGAAAGGCGGTTCACTTCAGAGACACTTGAGGGAAATCTATCCGAGGACTCTGGATTCAGAGCTCTCTGTAAGTTTAGCTATCGATATTTCTCGAGCAATGGAGTATTTGCATGTAAATGGCATCATTCACCGAGATCTGAAACCGGGTAATTTACTTCTTACAGAAGACAAGAAGCATATTAAACTTGCTGATTTTGGGCTGGCAAGAGAGGAGACATGTAATGAGATGACTTGTGAGGCTGGTACTTATCGCTGGATGGCTCCTGAGTTATTCAGCAAGGATCCGCTCCCAAAGGGAGCAAAGAAATGCTATGATCACAAGGCAGACGTCTATAGCTTTGCAATAGTTCTGTGGACGTTGGTCACAAACAGAATACCATTTAGAGGGCGGAGCGATGTAATGGCTGCATATGCTTCCGCAAAAAACATGAGGCCTAGCGTGGATGAGGTTCCAAGAGATTTACTTCCCCTGGTGGAGTCGTGTTGGGCAGCAGACCCAAAGCAGCGACCAGAATTCATGGAGATCACAGGCACTCTTACGAAGTTATTGCAGAACTGCCACTCAACAGCGACCTCACCACTTCCCATAATGACCGAGACTGAAAATCCAAATGATAGGACAGTGGGAGTGCCTTCCGGCACACACTCTTCAACCCAAGACTCTGTGGCAATCAAGCCTAAAGAGAAGAGGAGCAAGCGCAAGCGTTTGTTGCCCTGTTTGCTCAGATGCTTTGGAATTGGCAAATGA 1170 0.4564 MQQDKAAPAMVEKHAVLSDTELLFQLSLTYSLDNSGDNHAVDFKDDFVFNIDPSLLVDSAKVKIGQMIGEGPHSIVYEGWYESKPVAVKVILPNRTSQATPECKEKFQREVMLLSKIKHENIVEFIGASVEPAMMIITELMKGGSLQRHLREIYPRTLDSELSVSLAIDISRAMEYLHVNGIIHRDLKPGNLLLTEDKKHIKLADFGLAREETCNEMTCEAGTYRWMAPELFSKDPLPKGAKKCYDHKADVYSFAIVLWTLVTNRIPFRGRSDVMAAYASAKNMRPSVDEVPRDLLPLVESCWAADPKQRPEFMEITGTLTKLLQNCHSTATSPLPIMTETENPNDRTVGVPSGTHSSTQDSVAIKPKEKRSKRKRLLPCLLRCFGIGK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1489 389 MobiDBLite consensus disorder prediction 334 371 - -
Glsi05g1489 389 Gene3D Transferase(Phosphotransferase) domain 1 51 348 - -
Glsi05g1489 389 Pfam Protein tyrosine and serine/threonine kinase 63 319 IPR001245 GO:0004672|GO:0006468
Glsi05g1489 389 CDD STKc_MAP3K-like 68 320 - -
Glsi05g1489 389 PRINTS Tyrosine kinase catalytic domain signature 249 271 IPR001245 GO:0004672|GO:0006468
Glsi05g1489 389 PRINTS Tyrosine kinase catalytic domain signature 138 151 IPR001245 GO:0004672|GO:0006468
Glsi05g1489 389 PRINTS Tyrosine kinase catalytic domain signature 176 194 IPR001245 GO:0004672|GO:0006468
Glsi05g1489 389 PRINTS Tyrosine kinase catalytic domain signature 291 313 IPR001245 GO:0004672|GO:0006468
Glsi05g1489 389 MobiDBLite consensus disorder prediction 334 362 - -
Glsi05g1489 389 SMART serkin_6 62 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1489 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Glsi05g1489 389 ProSiteProfiles Protein kinase domain profile. 62 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1489 389 SUPERFAMILY Protein kinase-like (PK-like) 61 346 IPR011009 -
Glsi05g1489 389 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 58 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1489 Glsi-ChrGlsi05 63513978 63517454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1489 45 329 MAP Kinase Kinase Kinase AT5G66710 58.392 1.84e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi05g1489 PK_Tyr_Ser-Thr 1.6e-53 CL0016