Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1488 ATGGGGACAGGGGAAGAGAGCACAGCTAAACCTTCTAAACCGTCTTCTACAACTCAGGAGATACCAACAGCCCCTTCATATCCAGATTGGTCAAACTCTATGCAGGCTTATTATGCTCCCGGAGCCACTCCACCTCCTTTTTTTGCCTCAACTGTTGCCTCACCAACTCCTCACCCCTATCTGTGGGGGAGCCAGCATCCTCTAATTCCACCATATGGGACTCCGGTTCCATACCCACCTATATATCCTCATCCAGGGAGTGTTTATGCTCATCCTAGCATGGCCACGACTCCAAGCTCTGCACAGAAAAATACAGAATTCGAAGGGAAGGGGTCTGATGGAAAAGATCGGGTTTCTGCCAAAAAATTGAAGGGAACTTCTACTAACACAGGTTCCAAAGCGGGAGAGAGTGGAAAGGCAGGCTCGGGGTCAGGAAATGATGGCATCTCACAAAGTGCTGAAAGTGGTTCTGAAGGTTCATCAGATGCTAGTGATGAGAATGCTAACCCCCAGGAATCAACTAGCAACAAGAAGGGAAGCTTTGACCAGATGCTTGTTGAAGGAGCCAACGCGCAGAACAGTTCTACCAGCGCCATTTCTCAAAAGCCCGTTGTCACAATGCCAGCAACTAATCTTAATATAGGAATGGACCTGTGGAATGCATCTCCTGCTGGTGTTGAAGCTGCGAAAATGAGACATAATCAATCTGGTGCCTCAGCACCTGTTGCTCCTTCAACCGTAGTGGGACGTGAAGTTGCACTTGGTGAACAGTGGATACAAGATGAGCGTGAACTGAAAAGACAGAAGAGGAAACAGTCTAATAGAGAATCAGCTAGGAGGTCAAGACTACGGAAGCAGGCCGAGTGTGAAGAGTTACAGAAGAGGGTGGAGACGCTAGGAAGTGAGAATCGAACTCTGAGAGAGGAGCTGCATAGGCTTTCTGAAGAATGCGAGAACCTTACATCCGAAAATAATTCTATCAAGCAAGAGTTGGAACGGCTGTGCGGGCCAGATGCAGTTGCTAACCTTGAATAG 1035 0.4812 MGTGEESTAKPSKPSSTTQEIPTAPSYPDWSNSMQAYYAPGATPPPFFASTVASPTPHPYLWGSQHPLIPPYGTPVPYPPIYPHPGSVYAHPSMATTPSSAQKNTEFEGKGSDGKDRVSAKKLKGTSTNTGSKAGESGKAGSGSGNDGISQSAESGSEGSSDASDENANPQESTSNKKGSFDQMLVEGANAQNSSTSAISQKPVVTMPATNLNIGMDLWNASPAGVEAAKMRHNQSGASAPVAPSTVVGREVALGEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVETLGSENRTLREELHRLSEECENLTSENNSIKQELERLCGPDAVANLE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1488 344 Coils Coil 275 330 - -
Glsi05g1488 344 FunFam BZIP transcription factor 264 315 - -
Glsi05g1488 344 Pfam bZIP transcription factor 262 324 IPR004827 GO:0003700|GO:0006355
Glsi05g1488 344 SUPERFAMILY Leucine zipper domain 265 321 IPR046347 GO:0003700|GO:0006355
Glsi05g1488 344 SMART brlzneu 262 326 IPR004827 GO:0003700|GO:0006355
Glsi05g1488 344 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 269 284 IPR004827 GO:0003700|GO:0006355
Glsi05g1488 344 MobiDBLite consensus disorder prediction 70 86 - -
Glsi05g1488 344 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 339 IPR044827 GO:0003700|GO:0006355|GO:0043565
Glsi05g1488 344 MobiDBLite consensus disorder prediction 92 107 - -
Glsi05g1488 344 Gene3D - 265 319 - -
Glsi05g1488 344 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 264 327 IPR004827 GO:0003700|GO:0006355
Glsi05g1488 344 CDD bZIP_plant_GBF1 267 317 IPR045314 GO:0003700|GO:0006355
Glsi05g1488 344 MobiDBLite consensus disorder prediction 1 38 - -
Glsi05g1488 344 MobiDBLite consensus disorder prediction 1 203 - -
Glsi05g1488 344 MobiDBLite consensus disorder prediction 265 287 - -
Glsi05g1488 344 Pfam G-box binding protein MFMR 2 94 IPR012900 -
Glsi05g1488 344 MobiDBLite consensus disorder prediction 318 344 - -
Glsi05g1488 344 MobiDBLite consensus disorder prediction 108 122 - -
Glsi05g1488 344 MobiDBLite consensus disorder prediction 123 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1488 Glsi-ChrGlsi05 63506974 63509507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1488 1 344 bZIP Transcription Factor Family AT4G36730 54.571 1.84e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi05g1488 MFMR 1.1e-28 No_clan