Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1482 ATGCCGGTTGATTTAGATAATTCTTCCACAGCTTCAGGGGAAGCTAGCGTCTCCTCCTCTGGCAATCAGACAGTGCCTCCAAAGTCCAACACTAAGAAGAAGCGAAATCTTCCAGGAATGCCAGATCCAGACGCAGAGGTGATTGCTTTGTCTCCAAAGACTCTGTTAGCCACAAACCGATTCGTGTGTGAAATCTGCAACAAAGGATTTCAGAGGGATCAGAATCTGCAACTTCATCGACGGGGTCATAATCTACCATGGAAGCTTAGGCAGAGGTCCAGCAAGGAGGTGAGGAAAAGAGTTTACGTCTGTCCTGAGCCAACTTGTGTTCATCATGATCCTTCCAGAGCTTTAGGTGATCTCACTGGGATAAAGAAGCATTTCTGTAGAAAACACGGTGAAAAAAAGTGGAAATGTGACAAGTGTTCGAAGAAATATGCAGTTCAGTCAGATTGGAAGGCTCACTCTAAGATTTGTGGTACCAGAGAGTACAAATGCGATTGTGGAACTTTGTTTTCGAGGAGGGATAGCTTTATCACGCACAGGGCATTTTGTGACGCGTTAGCAGAGGAGAGTGCAAGAAATCAAACTCAGCCGCAGACCCAGACCCAGACGCAGGCTGCTGATAAGCCTAATTCTGACTCAGACCAGAAAATTATAACTGGTGGTTCATCACCTACAGCGCCACCGCCACAGCCACCTCCTCCCCCTCCACCCGCACCAGCTCCTCCTCAGTCAACTAGTGTCATACCATCTACCTTGCAGACGCAAAATCCAGAGTTGCCAGAAAACCCCCCACAAATTATAGAGGAACCACAGGCCGCTACTGCTTTAAATGGGAGCTGTAGCAGCAGTACTAGCTCAACGAGCAATGGCGGTACTAGCAGTAGTGTATTTGCAAGCTTGTTTGCTTCCTCAACTGCATCGGGAAGCCTGCAATCTCCCCAAGCACCTGCATTTACTGATCTAATAAGGGCCATGGCACGTCCAGATCGTCCAGCAGAGCTCACTGGGCCTCCATCTTCGGAGCCCATTTCTCTCTGCCTTTCCACTAGTCACGGGTCATCAATTTTTGGAACAGGAGGGCAAGAACGTCGCCAGTATGCCCCACCACCCCAGCCAGCTATGTCTGCCACTGCACTACTACAGAAAGCTGCTCAAATGGGTGCAGCAGCTACAAATGCATCATTGCTCCGTGGGTTTGGTATAGTGTCATCTTCGTCCTCTCCATCATTAAGCCAGCAAGATGCTTTGCATTGGGGTCAAAGGCAAGCAGAACCAGAGAGTGCCTCAGTTCCTGCAGGGCTTGGACTTGGGCTTCCTTGTGATGGTGGCTCTGGACTGAAGGAATTAATGATGGGGACTCCCTCCGTGTTTGGTCCAAAGCACACAACCCTTGATTTTCTCGGATTAGGGATGGCTGCTGGTGGCACCCCTAGTGGAGGCTTATCAGCGCTCATCACATCTATTGGCAGTGGTCTGGATGTTCCTGCTGCAGCAACATCCTTTGGTAGTGGAGAGTTCTCTGGCAAAGATATTGGGAGGAGCTCATGA 1554 0.4961 MPVDLDNSSTASGEASVSSSGNQTVPPKSNTKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARNQTQPQTQTQTQAADKPNSDSDQKIITGGSSPTAPPPQPPPPPPPAPAPPQSTSVIPSTLQTQNPELPENPPQIIEEPQAATALNGSCSSSTSSTSNGGTSSSVFASLFASSTASGSLQSPQAPAFTDLIRAMARPDRPAELTGPPSSEPISLCLSTSHGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSSPSLSQQDALHWGQRQAEPESASVPAGLGLGLPCDGGSGLKELMMGTPSVFGPKHTTLDFLGLGMAAGGTPSGGLSALITSIGSGLDVPAAATSFGSGEFSGKDIGRSS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1482 517 MobiDBLite consensus disorder prediction 412 434 - -
Glsi05g1482 517 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Glsi05g1482 517 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Glsi05g1482 517 MobiDBLite consensus disorder prediction 192 225 - -
Glsi05g1482 517 MobiDBLite consensus disorder prediction 192 267 - -
Glsi05g1482 517 MobiDBLite consensus disorder prediction 1 44 - -
Glsi05g1482 517 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Glsi05g1482 517 SMART c2h2final6 61 83 IPR013087 -
Glsi05g1482 517 SMART c2h2final6 102 132 IPR013087 -
Glsi05g1482 517 SMART c2h2final6 137 157 IPR013087 -
Glsi05g1482 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 477 IPR031140 -
Glsi05g1482 517 MobiDBLite consensus disorder prediction 1 31 - -
Glsi05g1482 517 MobiDBLite consensus disorder prediction 226 246 - -
Glsi05g1482 517 Gene3D Classic Zinc Finger 41 107 - -
Glsi05g1482 517 MobiDBLite consensus disorder prediction 247 263 - -
Glsi05g1482 517 FunFam protein indeterminate-domain 12-like 40 108 - -
Glsi05g1482 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Glsi05g1482 517 Gene3D Classic Zinc Finger 115 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1482 Glsi-ChrGlsi05 63470064 63472307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1482 1 517 IDZ Gene Family AT5G66730 62.942 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi05g1482 None None None