Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1479 ATGACGACTCGAATAGCGCCGGGAGTAGGAGCAAACTTGCTGGGTCAGCACTCGGCGGAGAGGAATCAAGATGCTACGGCTTATGTCGGCAATCTCGACCCCCAGGTAAGTGAGGAGTTGTTATGGGAGCTATTTGTTCAGGCTGGTCCAGTTGTTAATGTCTATGTTCCAAAGGATAGAGTGACTAATCAACATCAAGGATATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAACTATATGGAAAACCGATACGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGACGTAGGGGCTAACCTTTTCATTGGAAACCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTCATTGTTACAAATCCAAAGATCATGAGGGATCCTGAGACTGGAAATTCTCGTGGTTTTGGATTCATTAGCTATGATTCGTTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAGTATCTTTGCAACCGTCAAATAACAGTTTCATATGCGTATAAAAAAGACACTAAAGGGGAAAGGCATGGTACTCCAGCAGAGAGAGTTTTAGCTGCCAGCAATCCAAGTGTGCAAAGGAGCAGGCCTCACACTTTATTTGCCAGTGGTCCTCCAACTCTTCCCAATGTTCCTCAGGCTAATGGTACCATTGCTGCTCCAATGGCCCCTCGCCCCTTTGCAAATGGGGTTGCTCCAGCTACTATTCCTACCCTCCGGCCACCACCCCCTCAAGCTGCAGCATTCCCGCCTATGCCAGTAGCTGTGCAACCAGCATGGCACCAACAGCAGCCAAGTCAAACAATGCCACCACCCCCACCAGTCCAGCAGTTCAGGCCACCTCAATCTAGTATTCCACCACCTCCACCTCCACAAGCTATTGCGGCTCCTCCAAGGCTTCCACCACCAACTGGAATGGTAGGCCAACCACCTGTTTGGCGACCACCCCCTCCACCTCAGCAACAGGGTGGACAACACCCTACATTTCCTCAGTCCTCAATGCCACCTCCTTTCAATAACCTTCCCCCGCCACCTCCTTCAAGTTGA 1113 0.4843 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSVQRSRPHTLFASGPPTLPNVPQANGTIAAPMAPRPFANGVAPATIPTLRPPPPQAAAFPPMPVAVQPAWHQQQPSQTMPPPPPVQQFRPPQSSIPPPPPPQAIAAPPRLPPPTGMVGQPPVWRPPPPPQQQGGQHPTFPQSSMPPPFNNLPPPPPSS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1479 370 Gene3D - 112 200 IPR012677 -
Glsi05g1479 370 CDD RRM1_SF3B4 28 100 IPR034158 -
Glsi05g1479 370 CDD RRM2_SF3B4 111 193 IPR034159 -
Glsi05g1479 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Glsi05g1479 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Glsi05g1479 370 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Glsi05g1479 370 Gene3D - 16 111 IPR012677 -
Glsi05g1479 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Glsi05g1479 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Glsi05g1479 370 FunFam Splicing factor 3b subunit 4 16 108 - -
Glsi05g1479 370 MobiDBLite consensus disorder prediction 280 370 - -
Glsi05g1479 370 SMART rrm1_1 26 99 IPR000504 GO:0003723
Glsi05g1479 370 SMART rrm1_1 113 187 IPR000504 GO:0003723
Glsi05g1479 370 FunFam splicing factor 3B subunit 4 109 200 - -
Glsi05g1479 370 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 358 - -
Glsi05g1479 370 MobiDBLite consensus disorder prediction 287 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1479 Glsi-ChrGlsi05 63421134 63424698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1479 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 29.293 9.96e-19 85.9