Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1473 ATGGCCCCGTCTCCTGAAACTGCTTCATCTCCTAACTCTTCGTCAGAGCCTCCTCCTCCGCCTCCGCCTCCGCCTCCTCCTCCTCCTCCTCCTCCACCCCCACCGTCCCCGCCTCCACCATCTTCACAACGCCGTTCAAACCAGACTCCACCTTCCCATTCTTCATCCTCATCTAAATCAACTCCACCATCGCATGCATTACAATCGTCGTCGTCTCAGAACAAAAGTGGCGATGGACTTGAGTATAAAGCAATAATTGGAGGAGCCATTGGGGCAGGAGCCTTACTTCTTCTGATGATGATCGTAATTTGCGTAGTTTTCTCAAGGAAGAAGAAAAGAAAGCAACAGCACTATTATGAAGACGAGTCTCATGGAAAAGGCAGCGACTTTTACAGCAATGCTCCGCACTACAATTGGCAAGCGGGTTCCTATGGGGCAGACCATGGTATGAAGGCACACCCATCTCAAAAAGGAATGGGTCTTCCTGATGGTGGTGGTTTAGGCGGTGGCGGCTGGGGTGCACCGCCTCCTCCTTCCTCAATAATGAGCAGCACTGACTTGAGCTCCAACTTCTCAATGGGGCCACCCCCTCTACCTCCTCCTCCGCCAGGCCTTGCACTAGGGCTCGGTGGGGGCACCTTCAGTTATGAGGAGTTGGCATCTGCCACCGATGGATTTGCCAATGAGCATTTGTTAGGTCAAGGTGGCTTCGGTTATGTCCATAAAGGTGTATTGCCTAATGGAAAGGAAGTTGCAGTTAAAAGTCTAAAATCAAACAGTGGACAAGGAGAACGAGAGTTCCAAGCAGAGATTGACATCATTAGTCGCGTTCATCACCGACATCTTGTGTCTCTTGTTGGATATTGTATTGCTGGTGGACAGAGAATGTTGGTTTATGAATTTGTTCCTAATAAGACTTTGGAATATCATCTTCATGGCCATCCTCGAATAATACATCGTGATATCAAAGCTGCTAATGTCCTCATTGATGACTGCTTTGAAGCCAAGGTGGCTGATTTTGGTTTGGCTAAGTTGACTTCTGATAATAACACTCACGTCTCCACTCGTGTTATGGGAACATTCGGCTACTTGGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGAGTCATGCTATTAGAACTTATAACTGGGAAGCGGCCTATGGATGTCGACCACGCCATGGATGATGGTCTGGTGGACTGGGCCCGACCACTACTGACTCGTGGGTTAGAAGATGGAAACTTTGCAGAGTTAGTGGATCCATTTTTGGAAGGCAACTATAATAATCAAGAAATTGCACGAATGGCAGCTTGTGCTGCTGCAAGCATTCGTCATTCTGCCAAAAAACGTCCTCAAATGAGACAGATAGTTAGAGGTTTGGAAGGAGATGTGTCATTGGACGATTTGAGCGAGACGGTTATGGCTGAGCGTAACATTAGTCACACCTCTTCAATGGGGAGCTCTGACAGTGGGGGTAACTCGCGTGAGATGGAATTTCGCAAGTGA 1533 0.4788 MAPSPETASSPNSSSEPPPPPPPPPPPPPPPPPPPSPPPPSSQRRSNQTPPSHSSSSSKSTPPSHALQSSSSQNKSGDGLEYKAIIGGAIGAGALLLLMMIVICVVFSRKKKRKQQHYYEDESHGKGSDFYSNAPHYNWQAGSYGADHGMKAHPSQKGMGLPDGGGLGGGGWGAPPPPSSIMSSTDLSSNFSMGPPPLPPPPPGLALGLGGGTFSYEELASATDGFANEHLLGQGGFGYVHKGVLPNGKEVAVKSLKSNSGQGEREFQAEIDIISRVHHRHLVSLVGYCIAGGQRMLVYEFVPNKTLEYHLHGHPRIIHRDIKAANVLIDDCFEAKVADFGLAKLTSDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPMDVDHAMDDGLVDWARPLLTRGLEDGNFAELVDPFLEGNYNNQEIARMAACAAASIRHSAKKRPQMRQIVRGLEGDVSLDDLSETVMAERNISHTSSMGSSDSGGNSREMEFRK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1473 510 MobiDBLite consensus disorder prediction 12 45 - -
Glsi05g1473 510 SMART serkin_6 226 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1473 510 ProSitePatterns Protein kinases ATP-binding region signature. 232 254 IPR017441 GO:0005524
Glsi05g1473 510 Gene3D Transferase(Phosphotransferase) domain 1 306 486 - -
Glsi05g1473 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Glsi05g1473 510 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 314 490 IPR047117 -
Glsi05g1473 510 MobiDBLite consensus disorder prediction 160 191 - -
Glsi05g1473 510 MobiDBLite consensus disorder prediction 486 502 - -
Glsi05g1473 510 SUPERFAMILY Protein kinase-like (PK-like) 212 467 IPR011009 -
Glsi05g1473 510 FunFam proline-rich receptor-like protein kinase PERK8 301 484 - -
Glsi05g1473 510 MobiDBLite consensus disorder prediction 1 77 - -
Glsi05g1473 510 FunFam proline-rich receptor-like protein kinase PERK1 204 301 - -
Glsi05g1473 510 ProSiteProfiles Protein kinase domain profile. 226 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1473 510 MobiDBLite consensus disorder prediction 486 510 - -
Glsi05g1473 510 Pfam Protein kinase domain 310 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1473 510 MobiDBLite consensus disorder prediction 46 77 - -
Glsi05g1473 510 Gene3D Phosphorylase Kinase; domain 1 210 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1473 Glsi-ChrGlsi05 63367790 63370871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1473 46 510 Trihelix Transcription Factor Family AT1G70460 44.048 6.39e-123 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi05g1473 Pkinase 1.4e-23 CL0016