Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1469 ATGAAGAATGCCAAGTGGGGACAACCATTTCCAAAGCTTCAAAATTGGCGAGCCATGCAGAGTAATGGCAAGATGGGTTCACATTATGTTTCTGTCGAACTTGTTTGGTATTTTGCCAACGCCAATAGCAGCTCTAGCATTCCTGGTACTGAACAATCGAAATTACTTATGTTTCTATTGGTCCTTTCAAATGTGAAGGATAATTGCAGGGAGAAAGTGGAAGTTAAGTCAAAGGAAGAAATACTTGTAGATATTAAGGATGAAGAGTCCTCATTTATATCAACGTCAATGGCAGAAGAGGAAGAACACCTTCTGGAAGCTCGGATCAAGGAAGAAGAGGGGGAATCCAAACACAAGCCAGAGGAGGCACCCAACTTGAATGACACTCAATTTAGCAAGTTGGATGAGCTTTTAACACAAACCCAACTATATTCAGAATTTCTACTTGAGAAAATGGATGACATCACACTTAATGGGGATGAACAAGAGGATGAGCCAGCTGAAAAAAAGAGGGGCCGTGGCTCAAAAAGAAAAGCAACGTCAGATTACAATAATAAAAGGGCCAAAAGAGCAGTTGCTGCCATGCTTACAAGATCTAAAGAAAGTGATAAAACTGACAATATGAACCTGAGTGAAGAAGAAAGAATTGAAAAGGAGCAGATGGAGCTTATACCCCTGCTGACAGGTGGAAAATTGAAGAGTTATCAAATGAAGGGTGTCAAGTGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGAATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGTTTCCTTGCACATCTAAAAGGGAAAGGTTTGGATGGGCCATACTTAATAATTGCTCCTCTATCAACCCTCTCAAATTGGGTGAATGAGATTTCTCGGTTTGCTCCATCCCTCACTACAATCATCTACCATGGTGACAAAAAGCAAAGGGATGAAATGCGTAGGAAATATATGCCCAGAACAATTGGCCCAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCATTAAATGATGCTAAGAGATCTCTCAAATTCTATCAGTGGAAATATATTGTAATTGATGAGGGACACAGGCTCAAAAACTCAAAATGCAAATTAGTGCAGATGTTGAAGTTCTTAACTGTAGAAAATAAGCTTCTACTAACTGGGACACCTCTTCAGAATAACTTGGCAGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCTCTTCTCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAGTAATGGAGCAACAAAAGAAGAATTGGAAGAGAAAAGAAGAGCCCAGGTGGTAGTAAAGCTCCATGCCATACTTCGTCCCTTTCTTCTGCGAAGGATGAAGAGTGATGTTGAGCAAATGTTGCCACGAAAGAAGGAGATTATTATATATGCAAATATGACTGAACATCAGAAGAATTTTCAGGACCATTTGATTAATAAGACGTTGGAGAGCTATTTACATGAAAAATCTGCTACTGGACGTGCTTCGAAAAAGCTTAATAATTTGGCCATTCAGCTTAGGAAGAACTGTAATCATCCCGACCTCTTAGAGTCGGCCTTTAACGGTTCATATTTTTATCCACCTGTCAATGAGATAATTGAACAATGTGGAAAATTCCGTTTACTGGACCGTTTATTGGCTCATTTATTTGAACGGAAGCACAAAGTTCTAATCTTCAGCCAGTGGACTAAAATTTTGGATATAATGGATTATTATTTTAGTGTAAAGGGCCTTGAAGTTTGTAGAATTGATGGCAATGTGAAACTAGATGAAAGGAAAAGTCAGATTAATGACTTCAATGATGTGAACAGCAATTACCGAATCTTTCTTCTTAGTACTAGGGCTGGTGGATTGGGAATTAACCTTACTGCAGCTGACACTTGCGTTCTTTATGACAGTGACTGGAATCCTCAGATTGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAACCTGTTCATGTTTACAGGCTTGCAACAGCTCAATCTGTGGAGGTACTTGGCAATCTTGGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTGGAGCATGTGGTGATTGGGAAAGGGCATTTTCATCAAGAACGAACAAAGCCCAACAGTATGGAGATAACAGAGGTTGAAGAGGACTTGTTGGCATTGCTTCAAGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTGGAGAAGCTTTTGGATCGCAGTGATCTTATTCCTGATAACGTAAATTGTCCAAGCAATACTCTTCCCCTTAAGGGGCCTGGATGGGAGGTGGTGATTTCAACTGCAACTGGGAGCATGCTTTCTACTCTTAACAGCTAA 2406 0.399 MKNAKWGQPFPKLQNWRAMQSNGKMGSHYVSVELVWYFANANSSSSIPGTEQSKLLMFLLVLSNVKDNCREKVEVKSKEEILVDIKDEESSFISTSMAEEEEHLLEARIKEEEGESKHKPEEAPNLNDTQFSKLDELLTQTQLYSEFLLEKMDDITLNGDEQEDEPAEKKRGRGSKRKATSDYNNKRAKRAVAAMLTRSKESDKTDNMNLSEEERIEKEQMELIPLLTGGKLKSYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWVNEISRFAPSLTTIIYHGDKKQRDEMRRKYMPRTIGPKFPIVITSYEVALNDAKRSLKFYQWKYIVIDEGHRLKNSKCKLVQMLKFLTVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEKRRAQVVVKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYANMTEHQKNFQDHLINKTLESYLHEKSATGRASKKLNNLAIQLRKNCNHPDLLESAFNGSYFYPPVNEIIEQCGKFRLLDRLLAHLFERKHKVLIFSQWTKILDIMDYYFSVKGLEVCRIDGNVKLDERKSQINDFNDVNSNYRIFLLSTRAGGLGINLTAADTCVLYDSDWNPQIDLQAMDRCHRIGQTKPVHVYRLATAQSVEVLGNLGRMLKRAFSKLKLEHVVIGKGHFHQERTKPNSMEITEVEEDLLALLQEEESAEDKAIQTDISDEDLEKLLDRSDLIPDNVNCPSNTLPLKGPGWEVVISTATGSMLSTLNS 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1469 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 770 IPR027417 -
Glsi05g1469 801 Coils Coil 725 745 - -
Glsi05g1469 801 MobiDBLite consensus disorder prediction 162 183 - -
Glsi05g1469 801 MobiDBLite consensus disorder prediction 111 131 - -
Glsi05g1469 801 PANTHER SNF2/RAD54 HELICASE FAMILY 76 746 - -
Glsi05g1469 801 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 244 412 IPR014001 -
Glsi05g1469 801 FunFam ATP-dependent DNA helicase DDM1 226 471 - -
Glsi05g1469 801 MobiDBLite consensus disorder prediction 157 183 - -
Glsi05g1469 801 CDD SF2_C_SNF 544 678 - -
Glsi05g1469 801 Pfam Helicase conserved C-terminal domain 557 668 IPR001650 -
Glsi05g1469 801 Gene3D - 233 463 IPR038718 -
Glsi05g1469 801 SMART helicmild6 584 668 IPR001650 -
Glsi05g1469 801 Gene3D - 468 774 IPR027417 -
Glsi05g1469 801 Pfam SNF2-related domain 235 532 IPR000330 GO:0005524|GO:0140658
Glsi05g1469 801 SMART ultradead3 228 423 IPR014001 -
Glsi05g1469 801 FunFam Chromatin complex subunit A 106 472 704 - -
Glsi05g1469 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 462 IPR027417 -
Glsi05g1469 801 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 558 709 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1469 Glsi-ChrGlsi05 63345141 63351812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1469 218 685 RAD5 or RAD16-like Gene Family AT3G16600 24.390 1.50e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi05g1469 SNF2_N 3.7e-68 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1469 05 63345141 63351812 Glsi05g1469 05 63345141 63351812 ECH