Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1451 ATGATGCAGCGTTGTAGTAGCTCTCAGGGGCACGTGATGGGACCTTGCACATGTGGTATGTTTCACGGCCAAACCAATTCCTTCTCTATGCTATTCTCCATGCCCAACCACAAACCTTATGATGAAACCGACATGTATTCCTTTACGCCCTCTTCGTCTTCTTCGGTAGACTGCACCCTCTCTCTAGGCACCCCATCCACGCGTTTAACTGAAGGTGAAGAGAAGCGCAACCGCCATGAACACCGCTCTGACTCCAACTTCTGCTGGGATATATTACAGTCAAAACACACCCCACAATCCCACAGCAAGTCCGGCCGGGGCGGCAATGGTAGCTTCTCCAATGATCCACTCCTTGCTCGTCGCTGTGCCAACTGCGACACCACTTCAACACCCCTCTGGAGAAATGGCCCTAGAGGCCCCAAGTCCCTATGCAATGCCTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCCAGCGCTGTGGCTGCCACCACAGCAGCGAACTCAGGCGGCGTAATGGAGTCGGCCCAGATGTTCAGTCACCACAACAGTTCTTGGTACGAGCACTCACAGAGCCAGAAAATCCCGTGCCTCTCGCCGGCAATGGGCAATGAGTTCCGCTTCGTCGACGACGCCGATCGAGACTCCGAGAACGGCATTCCTTTCCTCTCTTGGAGACTCAACGTCACAGACAGACCGAGCCTCGTCCACGACTTTACAAGATGA 726 0.5386 MMQRCSSSQGHVMGPCTCGMFHGQTNSFSMLFSMPNHKPYDETDMYSFTPSSSSSVDCTLSLGTPSTRLTEGEEKRNRHEHRSDSNFCWDILQSKHTPQSHSKSGRGGNGSFSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAVAATTAANSGGVMESAQMFSHHNSSWYEHSQSQKIPCLSPAMGNEFRFVDDADRDSENGIPFLSWRLNVTDRPSLVHDFTR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1451 241 ProSitePatterns GATA-type zinc finger domain. 122 147 IPR000679 GO:0006355|GO:0043565
Glsi05g1451 241 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 157 - -
Glsi05g1451 241 Pfam GATA zinc finger 122 156 IPR000679 GO:0006355|GO:0043565
Glsi05g1451 241 PANTHER GATA TRANSCRIPTION FACTOR 18 10 241 IPR044272 GO:0003700|GO:0009908
Glsi05g1451 241 ProSiteProfiles GATA-type zinc finger domain profile. 116 152 IPR000679 GO:0006355|GO:0043565
Glsi05g1451 241 SMART GATA_3 116 168 IPR000679 GO:0006355|GO:0043565
Glsi05g1451 241 MobiDBLite consensus disorder prediction 60 81 - -
Glsi05g1451 241 CDD ZnF_GATA 121 153 IPR000679 GO:0006355|GO:0043565
Glsi05g1451 241 Gene3D - 118 193 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1451 Glsi-ChrGlsi05 63198970 63199799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1451 17 241 C2C2-Gata Transcription Factor Family AT3G50870 45.017 2.42e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi05g1451 GATA 5.8e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1451 05 63198970 63199799 Glsi09g0563 09 3924576 3925367 CCT
Glsi05g1451 05 63198970 63199799 Glsi05g1451 05 63198970 63199799 ECH