Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1443 ATGGAACAAAGAGGCCTGGAAAAGGAAATAGAGATGCCAACCTCTTCAGATTATAATCCCCCCAGTAGGGATTCTTCTGCCCAGCTGTCTCCTCCAACTCTTGCTTCAACTGTAGGGGAAAGAAGTGATCAGCCTCCTCAAACTTCAGACCACCATCATCTTTATACTCCTCCTCCTCCTCCTCAACATTTGCAGAGACCCAGAAGAGATCCAGATCCAAGCTCATCTCCTATTGTCAGGGGATCAAACCCAAGAGAACCACCACCACAAGCAGTAACCACGATCTCGACCCCATTGATTAGGTACCGAGAATGTTTGAAGAATCACGCAGCGAGCATGGGGGCTCATGTTGTCGATGGATGCGGAGAGTTCATGCCAAGCGGAGACGAAGGCACCCCAGAATCCTTGAGATGTGCTGCTTGTGAGTGCCACCGCAATTTTCATCGAAAAGAGACCGAAGGTGAACCACCACATGTGCCCAATTATTACAGATATCACCCCAACAAAAGCAACGGTCAAAATAGGATACCTTCTCCTCCTCATCCTCAGTTTCCTACAGCCCCTTCCCTACATCAACAGCTTAGATTTTCACATGGGCTCGTAAACTTTTCATCAGGCCTGTTTCCACCCATGATGATGACATTCGGAGGCGGCGGGGGAGGCCCTGCAGAGTCTTCCAGCGAAGATCTGAATATGTGTCAACTTAACGCCGGAGGGCAAGTCTCAGTAGAGCCACTATTATCAAAGAAGAGGTTTCGGACCAAGTTTACCCCGCAACAAAAGGACAGGATGATGGAATTTGCTGAGAAGTTGGGTTGGAAGATCGAGAAACATGACGAGCAAGAAGTCCAACAATTTTGTTCTCAAGTGGGTGTGAAACGGCAAGTTTTCAAGGTTTGGATGCACAATAACAAGCAGGCCATGAAGAAGAAGCAAATGTAA 942 0.4788 MEQRGLEKEIEMPTSSDYNPPSRDSSAQLSPPTLASTVGERSDQPPQTSDHHHLYTPPPPPQHLQRPRRDPDPSSSPIVRGSNPREPPPQAVTTISTPLIRYRECLKNHAASMGAHVVDGCGEFMPSGDEGTPESLRCAACECHRNFHRKETEGEPPHVPNYYRYHPNKSNGQNRIPSPPHPQFPTAPSLHQQLRFSHGLVNFSSGLFPPMMMTFGGGGGGPAESSSEDLNMCQLNAGGQVSVEPLLSKKRFRTKFTPQQKDRMMEFAEKLGWKIEKHDEQEVQQFCSQVGVKRQVFKVWMHNNKQAMKKKQM 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1443 313 MobiDBLite consensus disorder prediction 1 95 - -
Glsi05g1443 313 NCBIfam homeobox domain, ZF-HD class 249 306 IPR006455 -
Glsi05g1443 313 Pfam ZF-HD protein dimerisation region 100 152 IPR006456 -
Glsi05g1443 313 Gene3D - 239 310 - -
Glsi05g1443 313 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 102 151 IPR006456 -
Glsi05g1443 313 FunFam Zinc-finger homeodomain protein 2 238 310 - -
Glsi05g1443 313 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 83 306 - -
Glsi05g1443 313 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 101 151 IPR006456 -
Glsi05g1443 313 SUPERFAMILY Homeodomain-like 244 310 IPR009057 -
Glsi05g1443 313 MobiDBLite consensus disorder prediction 15 44 - -
Glsi05g1443 313 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1443 Glsi-ChrGlsi05 63134977 63135918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1443 94 313 ZF-HD Transcription Factor Family AT2G18350 50.901 7.66e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi05g1443 ZF-HD_dimer 1.3e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1443 05 63134977 63135918 Glsi09g0567 09 3941893 3942837 CCT
Glsi05g1443 05 63134977 63135918 Glsi05g1443 05 63134977 63135918 ECH
Glsi09g0567 09 3941893 3942837 Glsi05g1443 05 63134977 63135918 ECH