Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1438 ATGATCACAGCCATGTTACCCAATAAAATGATACTGTTCAGTACTTTAGTAGCTTTGGGAGGAGGCTTTGTCTCCTCACTGGCCACGGTGGGTGCTTCTGAAGCCTTTCCTTTTCATTTCTTTACTCTGGTGCCTCTGCCCTTTCTATCTCTCTCTCCCTCTCTTCCCCTGTTTCTCTTCTGGCACAGGGCATTTAAGAGTAAAGACTCTCTGGAACCGTTGCTTCCTGTTCTTTTTGCTTATAGCTGCACGAAAGACGCTGTAAAGGACTCAATTGAGCTTGCAGACACTCCAGTCAAGTTAATGGGTAGTGATGCTTGCGATGTAGTGGAGGCATTACCGAATCCCTGCTCCTTTAAGGTGCATCGTACAATGTGCACAGAACTCATGAACTTAGTTGATAGAATCTCAAGGATATTACCAGATATAGAGGCAGCACGGCCTCGATGCTCATTGGGAATACAGTCTCTGTGCTCGTTAAACAGTGCAATTGACATGGCCAAACTACTTCTGCAACATTGCTGCGAATGTAGCAAGCTATACCTGGCAATGACAGGGGATTCACTACTTTCAAAATTTCAAAAGGCAAGAAAGTCGTTGGGGCATAGCTTGAACCAAATTCAGAGTATGGTTTCGGTTATGTTAGCTGCAGAGATTTCTCAAATAATTGATGACCTTGGATGTGCGACATTTGTCCTGGACTCCTCTGAACAAGAGGCTGGGAGGGTTATGAAAGTGTTGCTCCAGCAAGGTGCTTCGGCCTCAGATTCAATGGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCAGCAGAAAAACTTAATATCACATCACCAAAGGCCATCTTAATAGAGAAACGATCAATTAAGAAGTTGCTAGATAAAGTTGGAACAAATGAACCAACCAAAAAGATGATCTTGAGGTATCTGTTGTATCTATTAAAAAAGTATGGAAACTGCGTCATTGGAGAACAAATGGAAAAGGTATATGTTCGCAGTGATGGACCAATTGAAACTGAGAGCTCCAGTCATGATTCTCTTCACAGCCATTATGTTAAATTGGACCCATGCCTGAACTATGATCAGTATAAGACACACACCCATGAGTTAAGTGGAGTTATACCACCTGAGGAGTATAAGTGCCCAATATCTTCAAGATTGATGTATGATCCTGTTGTCATTGCTTCTGGAGCAACATATGAAAGGTTGTGGATACAAAAATGGTTTGATGAGGGTAATGATATATGCCCAAAAACTGGAAAGAAACTGGTCCATATGTCAGTGACTCCAAATATTGCCATGAAGGACTTAATATCAAAGTGGTGCAAAAATAATGGAGTCACCATTCCTGACCCAAGCAGGCGAGCAGAAAATTTTAACTCATGGGAAGCTTCCTCCACTACCGTTAGGAGCTTTGACACCTCTATGAATAATTTGCACTTGCCGACGGATCTTAGTAACATGTCACTTGGATCATTAGACAGTTATGGTTCTGATTTTTCTCAGGCTTTGACAACTCATGGCTTAAATTCAATGTTGATGAAGACTAATGACAATTTTGACAGTCATCAATCTCATGCACACATAGATGATGCAGATTTAATGCTTTTGTCTAAGTTCCCTGACCTTCAATGGCATTCTCAATGCCAGGTCATTGAAGATCTGAAAATTTGTTTGAAATGCAATTGCCATGCTTTTTGTTCCTTGTCATCTGAGAACTTCATTAAATCACTCTTCAAATTTCTGAACAATGCATATGATCTGCATGACACAAAAGCTCTGAAAGCTGGAACTCAGTTACTGTTGGAATTTGTGAAAAAGTGCAGAGACAGCCTAACTTATCTTAATGAGGATAAATTCAGTATGTTGGGCAGTCTTCTCGATTCAGAAGTAATAGGAGAAGCTCTTGCCATAATTGAAGAACTTTCAGGGAGTCAAGATAGTAAAGCTAAAATCGCAGCATCCAGTGCACTCACTTCCATTTTAAAGATCCTGCACTCGGAGAGCAGAGAGTTCCAACAACAAACTATCAGAATACTGTATAATTTGTCCTTCAACGGTGAAGCTCGTTCCCACATGGTATCTCTCCAGTTCATCCCAGGATTGCTGCCATTTTTTAAAGACAGTACTGTGTTGAGATACTGTATATGCATATTGAAAAACCTTTGTAATAATAAAGAGGGTAGGATTTCTGTTGCCGAAACTAAAGGATGCATATTTGCTGTTGCTGAAGTGCTTGAGACTGGCAGTGATGAGGAACAAGAACACGCACTGGAGGTTCTACTTCCTTTATGCTCTCAACGTGTGGATTGTTGTCAGCTGGTCATGGAACGAGAAGTTATCTCTTCCCTTGTCTTTATCTCGAAAAATGGAAATGACAAAGGAAAGGTGAATGCATTGGAGTTGCTCCGACTTTTGAGGGATGTTGAATATGTTAAGGATGAAGAACAATGCTTGGTATCATCAACTCACAGCACTTCTCGAGAGTCTAACAATCACTCTCAACAGAAGAAATCATCAAAGGCATCTGCATTTTTCAAGAAGCTTTCGGTGTTCTCCAAATCCAGTTCACATGAATGGGAAAAACAAAAGAAGAGATGA 2598 0.4069 MITAMLPNKMILFSTLVALGGGFVSSLATVGASEAFPFHFFTLVPLPFLSLSPSLPLFLFWHRAFKSKDSLEPLLPVLFAYSCTKDAVKDSIELADTPVKLMGSDACDVVEALPNPCSFKVHRTMCTELMNLVDRISRILPDIEAARPRCSLGIQSLCSLNSAIDMAKLLLQHCCECSKLYLAMTGDSLLSKFQKARKSLGHSLNQIQSMVSVMLAAEISQIIDDLGCATFVLDSSEQEAGRVMKVLLQQGASASDSMENSEIKALQFAAEKLNITSPKAILIEKRSIKKLLDKVGTNEPTKKMILRYLLYLLKKYGNCVIGEQMEKVYVRSDGPIETESSSHDSLHSHYVKLDPCLNYDQYKTHTHELSGVIPPEEYKCPISSRLMYDPVVIASGATYERLWIQKWFDEGNDICPKTGKKLVHMSVTPNIAMKDLISKWCKNNGVTIPDPSRRAENFNSWEASSTTVRSFDTSMNNLHLPTDLSNMSLGSLDSYGSDFSQALTTHGLNSMLMKTNDNFDSHQSHAHIDDADLMLLSKFPDLQWHSQCQVIEDLKICLKCNCHAFCSLSSENFIKSLFKFLNNAYDLHDTKALKAGTQLLLEFVKKCRDSLTYLNEDKFSMLGSLLDSEVIGEALAIIEELSGSQDSKAKIAASSALTSILKILHSESREFQQQTIRILYNLSFNGEARSHMVSLQFIPGLLPFFKDSTVLRYCICILKNLCNNKEGRISVAETKGCIFAVAEVLETGSDEEQEHALEVLLPLCSQRVDCCQLVMEREVISSLVFISKNGNDKGKVNALELLRLLRDVEYVKDEEQCLVSSTHSTSRESNNHSQQKKSSKASAFFKKLSVFSKSSSHEWEKQKKR 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1438 865 CDD RING-Ubox_PUB 375 424 IPR045210 -
Glsi05g1438 865 Pfam U-box domain 375 444 IPR003613 GO:0004842|GO:0016567
Glsi05g1438 865 SUPERFAMILY RING/U-box 373 451 - -
Glsi05g1438 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 448 IPR013083 -
Glsi05g1438 865 Pfam Kinesin-associated protein (KAP) 592 783 - -
Glsi05g1438 865 Gene3D - 596 829 IPR011989 -
Glsi05g1438 865 SMART Ubox_2 377 440 IPR003613 GO:0004842|GO:0016567
Glsi05g1438 865 MobiDBLite consensus disorder prediction 821 841 - -
Glsi05g1438 865 ProSiteProfiles U-box domain profile. 373 447 IPR003613 GO:0004842|GO:0016567
Glsi05g1438 865 SUPERFAMILY ARM repeat 562 805 IPR016024 -
Glsi05g1438 865 PANTHER U BOX DOMAIN-CONTAINING 124 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1438 Glsi-ChrGlsi05 63090731 63097145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1438 108 816 U-box Gene Family AT4G36550 36.960 1.20e-138 427