Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1436 ATGAAAGATGGAATGGGTAGCATATCGAAGCGAAGTGCTGATGGGAAGCAATGGCACAGTTGGGCAAAGTCACATATTGCTCCTGATGTCCCTCTTCCTCCATTTGAACCTGTTCAACAGGGGCAATGGGCAAATCTACCACCTGAATTGCTTTTGGACATAATCAGGAGGGTGGAAGAGACTGAGATATCTTGGCCTGCGCGGGTTGTCATTCTTTCTTGTGCTTCAGTATGTAAATCGTGGAGGGCTGTTACCAAAGAGATCGTTAAGACTCCTGAGCAATGTGGAATGCTTACATTTCCTATCTCATTGAAGCAGCCGGGGCCTCGTGATTCTCCAATTCAGTGCTTTATCAAGAGGAACAGAGAAACTTCTACATATTTATTGTACTTTGGTCTGATGCCATCGGAGAATGAGAGTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGAAGGGCAACAGGCACAGACTTTGTTATATCTTTGGTTGCAGATGATTTTTGTCGGGCCAGCAAAACATATGTTGGTAAATTGAGGTCTAATTTTTTGGGTACCAAGTTCACAATCTATGACAGTCAACCTCCACAGGAAGCTGGAGTTCAACCCAATATTCGTTCTAGTCGAAGATTTCACTCTAAGCAGGTGTCTCCAAGAGTTCCAGCATGTAACTACAATGTTGGCACCATTGCCTATGAGCTCAATGTTCTCCGCACCAGAGGGCCAAGAAGAATGCACTGCATCATGAACTCTATCCATGTCTCAGCTATTCAGGAAGGGGGCACCGCCCCAACTCCTACATCATTTCCTGATATCTTTGAAGAGCGATTTTCTCCCTCACCAGCACTGAAGGGAAAAGATCCAATTTCAGATTTTAACTCTGCAAGCATCTCAGAGCCACCAGTATTGAGCCAAGGCTCAATGGAGCCTCTGGCACTTAAAAACAAGGCTCCTAGATGGCATGAACAGCTGCAGTGCTGGTGCCTGAACTTCAAAGGTCGTGTTACGGTGGCATCTGTCAAGAATTTCCAGCTTGTGGCTGCTGTTGATCCATCTCACAATGTTTCTGTTGCAGAACAAGAAAAGGTAATCTTGCAGTTTGGCAAGATCGGAAAAGACATATTTACCATGGATTACCGTTATCCCCTCTCTGCCTTTCATGCTTTCTCCATTTGTTTGAGCAGCTTTGATACTAAACCAGCCTGTGAATGA 1209 0.4467 MKDGMGSISKRSADGKQWHSWAKSHIAPDVPLPPFEPVQQGQWANLPPELLLDIIRRVEETEISWPARVVILSCASVCKSWRAVTKEIVKTPEQCGMLTFPISLKQPGPRDSPIQCFIKRNRETSTYLLYFGLMPSENESDKLLLAAKKIRRATGTDFVISLVADDFCRASKTYVGKLRSNFLGTKFTIYDSQPPQEAGVQPNIRSSRRFHSKQVSPRVPACNYNVGTIAYELNVLRTRGPRRMHCIMNSIHVSAIQEGGTAPTPTSFPDIFEERFSPSPALKGKDPISDFNSASISEPPVLSQGSMEPLALKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSVAEQEKVILQFGKIGKDIFTMDYRYPLSAFHAFSICLSSFDTKPACE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1436 402 Gene3D Tubby Protein; Chain A 100 402 IPR025659 -
Glsi05g1436 402 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Glsi05g1436 402 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Glsi05g1436 402 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Glsi05g1436 402 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Glsi05g1436 402 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Glsi05g1436 402 PRINTS Tubby superfamily signature 380 402 IPR000007 -
Glsi05g1436 402 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Glsi05g1436 402 SUPERFAMILY Tubby C-terminal domain-like 92 402 IPR025659 -
Glsi05g1436 402 ProSitePatterns Tub family signature 1. 330 343 IPR018066 -
Glsi05g1436 402 SUPERFAMILY F-box domain 38 86 IPR036047 GO:0005515
Glsi05g1436 402 Pfam F-box domain 43 90 IPR001810 GO:0005515
Glsi05g1436 402 Gene3D - 36 90 - -
Glsi05g1436 402 Pfam Tub family 104 397 IPR000007 -
Glsi05g1436 402 PANTHER TUBBY-RELATED 38 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1436 Glsi-ChrGlsi05 63087933 63089683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1436 1 402 TUB Transcription Factor Family AT2G18280 63.971 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi05g1436 Tub 7.2e-106 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1436 05 63087933 63089683 Glsi05g1436 05 63087933 63089683 ECH