Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1424 ATGGAGATTGAGCCGCCGATTAGCAAATTTTCTCAGCCCTCTCATTCCAGATTCTCAGCTAGGGAGGGACGCAGTGGTTATGAACCATCAGACACAGAGACAGAATGGCACGAAACTTCACGGCATGAACGAGAAAGAAAGAATCTAACTTTGGGTCCCGAAGAAACAAAAGCTCTGACGCTAATGAATAAAAGCTCAATGTCATTACACCGGAGGCACGCTTTAAGGTTTGACCACGAAATCTCATCTCCTGCTTCTAGGGGTTCAGTTCCAAACCCAGCACGAAGAAGACACCTTAGCAAGTCACCGTATAAGCCCTTTAGAGCTGATGGTGATGGTTTATCACCCATAACTGGTTTAGATATGCGCAGAAATGTCAGTCCCTTGCCAAAACCTGACCTTGGAAGGCAAGTATCTCCATATAAATCTGAAAGAGAAAATCACAATCAGGCTATGGATGGCACTCTAAGTAATTACAGAAAGCTTGGTCAAAGAACACCACCTGGAGAGAACAGAGTGAGTGAGAAACCAAACTACAGGAGACCGGTGACTGCTCCGAGACTAAGAGGAAGGGAGAAGGAACAAGAGAGTAATTATGAGCAAACATTGTCTAAAGGCACGATTCATATACGGAGGGAAGCTTCCAACGGGAGGGCTCCTTCAATCGGAGAGATCAACGAAATGGTTGCGCAGGCGAAAATTTCAGATGATCCCAGAGATAATAATGAGCTTATGGAAAGTACAGAGTCGACTTTACCCGGTGATATTTTCTTTTCTCGTGAATGCACTGCCACGCTGACGCAGAAGACTTCGTTAACAAAATCCAACATTGACGTTGTAACCGAGTTTGGCCCAAGGCCTAAGATCCTTCCCCAAAGAAGCACTCCCTTCCATCACCCAAACAGAGGAAAAGGTAATCTCAATATGAATATACGAGGTACCTCATCTAGCACCGTCTTGTCTCGATCAACTACAGTCTCCAGCTCTGCTGCCAAAAGCAAAAAGGGTAGCGGCAAGCTAAGTGCCAGCAGTAGTATGACGAGTGATGCTAGTGGAAAGACAAGTGCAAGCGTGCAGAAATTCATAGCGAATAGAAAAAAGAGCCAAGCACCGGCATGGTTTGCTTGCATGAGAAAAGAGTCCTGCAAAACATCAAAAGAGTCGCCTGAACATCGATCAATTGATGAAGCTTCTTTCATTGAGAAAGCCTTCGTAGTGGAAAGGCTCCCACAATTCTGGGCAGATAAGTATCAACCTGCTTCACTGGATGGTTTCATTTGCCACCAACAAGAAGCTCAACTTCTCAAGAAACTAGTGTCTCAGGACGTTTGTCCTCATATTTTGCTCAAGGGACCCTCTGGGTCCGGGAAAAGGGCGCTAGCAATGGCTCTTCTGCGAGAAATATACGGTGATGCATGTTCGAATCTATCTCATGATTTAAAACAATTCTCCACTCGGGAAAGAAGGCCCATGAAAGTAACGGTTCCAATAACGTCCAGTTCTCATCACATGGAGCTCAACGTAAATATGGAACCAAGTGCTAAATATGCTTTAATGGGATTAGTCAAGGAAATAAGCAGTGAATTTTCGATTATCCCTGAAGACAGCAATATTAATTTCAAGTCGAATTATAAAGTAATAGTTCTTTACGAGGTTGACCAAGCAGCAGACAACATCCAGCACATGATAAAATGGATTATAGACCGCTATTCAGATATATGCAAACTTGTAGTTTGCTGTGAAGATGACGCAGACATTCTTGAACCTGTGAAAAACCGGTTCAAAGTGATTCAAGTTGATGCTCCTCTAACTCACGAAATTATGGATGTTCTTGTTCAGATAGCAAAGCAAGAGGAAATTGATCTATCCATGAATTTTGCTGATAAGATTGCTACGAAATCAAAGCAGAACCTCAGGGAGGCAATCATGGCTCTTGAAGCATGCAGAGCACACAACTATCCATTTTCAGAGGAACAGCCAGTTCTGCTTGGATGGGAGGAGATCCTTATGGAAATTTCTGCAGAGATCCTATCCGATCCATCACATTCACGCTTATTCTCAATAAGAGGGAAATTTCAGAAGCTTCTCGTAGATTTTGTCGACCCCCAACTGATTCTCCGGAAACTCGTGGAGCAGCTACTGAAAGGAATTGACTGCAGCTTAAAGAGGGAGGTCTTCTACTGGCATGCTTATTATGACAAAAGACTCCCACCAGGAACTACAGCTTTGCTAAAATTAGAAGAATTTGTGGCCAAGTTCATGAGCATATACAGAAAAAGCTGTGGCAGTCGGCAGTTTGTGTAG 2304 0.4366 MEIEPPISKFSQPSHSRFSAREGRSGYEPSDTETEWHETSRHERERKNLTLGPEETKALTLMNKSSMSLHRRHALRFDHEISSPASRGSVPNPARRRHLSKSPYKPFRADGDGLSPITGLDMRRNVSPLPKPDLGRQVSPYKSERENHNQAMDGTLSNYRKLGQRTPPGENRVSEKPNYRRPVTAPRLRGREKEQESNYEQTLSKGTIHIRREASNGRAPSIGEINEMVAQAKISDDPRDNNELMESTESTLPGDIFFSRECTATLTQKTSLTKSNIDVVTEFGPRPKILPQRSTPFHHPNRGKGNLNMNIRGTSSSTVLSRSTTVSSSAAKSKKGSGKLSASSSMTSDASGKTSASVQKFIANRKKSQAPAWFACMRKESCKTSKESPEHRSIDEASFIEKAFVVERLPQFWADKYQPASLDGFICHQQEAQLLKKLVSQDVCPHILLKGPSGSGKRALAMALLREIYGDACSNLSHDLKQFSTRERRPMKVTVPITSSSHHMELNVNMEPSAKYALMGLVKEISSEFSIIPEDSNINFKSNYKVIVLYEVDQAADNIQHMIKWIIDRYSDICKLVVCCEDDADILEPVKNRFKVIQVDAPLTHEIMDVLVQIAKQEEIDLSMNFADKIATKSKQNLREAIMALEACRAHNYPFSEEQPVLLGWEEILMEISAEILSDPSHSRLFSIRGKFQKLLVDFVDPQLILRKLVEQLLKGIDCSLKREVFYWHAYYDKRLPPGTTALLKLEEFVAKFMSIYRKSCGSRQFV 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1424 767 MobiDBLite consensus disorder prediction 21 52 - -
Glsi05g1424 767 MobiDBLite consensus disorder prediction 150 164 - -
Glsi05g1424 767 Gene3D - 604 662 - -
Glsi05g1424 767 MobiDBLite consensus disorder prediction 284 351 - -
Glsi05g1424 767 MobiDBLite consensus disorder prediction 185 199 - -
Glsi05g1424 767 FunFam Replication factor C subunit 3 411 602 - -
Glsi05g1424 767 FunFam replication factor C subunit 3 604 661 - -
Glsi05g1424 767 Gene3D - 664 757 - -
Glsi05g1424 767 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 413 746 - -
Glsi05g1424 767 MobiDBLite consensus disorder prediction 76 203 - -
Glsi05g1424 767 MobiDBLite consensus disorder prediction 1 55 - -
Glsi05g1424 767 MobiDBLite consensus disorder prediction 307 351 - -
Glsi05g1424 767 Gene3D - 411 602 IPR027417 -
Glsi05g1424 767 SUPERFAMILY post-AAA+ oligomerization domain-like 664 757 IPR008921 GO:0003677|GO:0006260
Glsi05g1424 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 650 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1424 Glsi-ChrGlsi05 63031476 63034956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1424 412 758 Core DNA Replication Machinery Family AT5G27740 39.831 4.82e-84 269