Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1405 ATGGCTAAGGACGTTGGTGTTGCTGGGCGTGGGTCATTCAAAAGTGGAAAGACATCGATTTTAGTGGCAACAGATGTGGCAACACGTGGTCTTGACATTCTACTTGTAGCTCATGTGGTAAATTTTGATTTTCCGAATGACATTGATGATTATGTGCATCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGCAACAGCCTTTTTTAATGACAATAATTTGTCGTTGGCTAGGCCATTGGCTGATCTGATGCAAGAAGTAAATCAAGAAGTACCTGCATGGCTTACACGATTTGTAGCCAGAGTTTCTTTTGGTGGTGGCAATCGAAATTACCACGACCCACCTCCAGCTCCACTCATTGACGTTGTAGCATCGAGATTAAAGATTGACAGAACACAGATCAAGATGTGTATCATCAACATGGCCAACCTCCTCCCAAGCTATGGGGACGAGAGAATCATAGTGTTCACTACTAGCCACAAGGACAAGCTTGACCTTGCATTACTGCGTCCTGGTAGAATGGATGGGCACATTAACAATCCCCTCTACCAAGAAGTTCAAAGCATCGAGCAGACCATATGGGTTACACCAGCAGAGGTTGTAGAGGGACTGATGAAGACCGATGATGCTAATGTTGCTGTCGAAGGACTTGTGGGTTTCCTCAAACGAAAGAGCGCTGAAGGAAACCGAGCGAAGGATGAAGAGATTTGA 717 0.4519 MAKDVGVAGRGSFKSGKTSILVATDVATRGLDILLVAHVVNFDFPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLARPLADLMQEVNQEVPAWLTRFVARVSFGGGNRNYHDPPPAPLIDVVASRLKIDRTQIKMCIINMANLLPSYGDERIIVFTTSHKDKLDLALLRPGRMDGHINNPLYQEVQSIEQTIWVTPAEVVEGLMKTDDANVAVEGLVGFLKRKSAEGNRAKDEEI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1405 238 Gene3D - 122 178 IPR027417 -
Glsi05g1405 238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 185 IPR027417 -
Glsi05g1405 238 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 12 100 - -
Glsi05g1405 238 Gene3D - 10 104 IPR027417 -
Glsi05g1405 238 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 101 IPR001650 -
Glsi05g1405 238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 99 IPR027417 -
Glsi05g1405 238 Pfam Helicase conserved C-terminal domain 12 62 IPR001650 -
Glsi05g1405 238 ProSitePatterns AAA-protein family signature. 154 172 IPR003960 GO:0005524|GO:0016887
Glsi05g1405 238 SMART helicmild6 3 62 IPR001650 -
Glsi05g1405 238 CDD SF2_C_DEAD 13 71 - -
Glsi05g1405 238 Gene3D - 179 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1405 Glsi-ChrGlsi05 62950232 62951677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1405 13 94 Eukaryotic Initiation Factors Gene Family AT3G19760 37.805 1.82e-15 73.2