Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1400 ATGTCAACCACGAAGCCAGAGCAATGGCAGTGGGAAAACGCCACAGCCGGCGCCGTGGCCGGGTTCGCCACCGTCGCCGTTATGCATCCCCTTGACGTAGTCCGAACTAGGTTCCAAGTTAACGATGGTCGAGTCTCTCTTCTTCCGAGTTATAAGAATACTGCTCACGCCATTTTCACCATTACTCGCTTAGAGGGCTTAAGAGGGTTGTATGCAGGCTTTCTTCCTGCAGTTCTCGGGTCAACAATTTCTTGGGGTTTATACTTCTTTTTCTATGACAAAGCCAAACAAAGGTATGCTAGGAACAGGGAGGAGAAGCTGAGCCCAGGTTATCATCTTGCTTCAGCTGCTGAAGCAGGAGCTTTGGTTTGCTTGTGCACAAATCCTGTTTGGCTAGTAAAGACAAGATTGCAGCTTCAGACTCCTCTGCATCAAACCCGGCCATACACTGGGCTTTATGATGCATTTAAGACCATAATGAGAGAAGAAGGATTGAGGGCACTTTACAGAGGGATAGTTCCTGGTCTTTTTCTGGTCTCTCATGGTGCTGTTCAGTTCACAGCTTATGAAGAGCTTCGTAGAGTGATTGTTGATTTGAAGAGTAAGGAACAACAAATGCATCATCAAAACCCTGATAAACTGTTGAATTCTGTCGATTATGCTATTCTTGGAGCAACTTCAAAAGTTGCTGCCATACTTCTAACCTATCCATTTCAGGTTGTAAGGGCTCGATTGCAGCAACGACCTAGTAGCGATGGGGTTCCAAGATATGTAGATAGTTGGCATGTCGTGAAGGAAACTGCAAGGTTTGAAGGTGTTAGAGGGTTTTACAAAGGAATTACCCCAAACCTTTTGAAAAATGTTCCTGCTTCTTCAATAACATTTATTGTCTATGAAAATGTTCTAAAATTGCTTAAACTGGCTAGAAAAAATGACTAA 939 0.4398 MSTTKPEQWQWENATAGAVAGFATVAVMHPLDVVRTRFQVNDGRVSLLPSYKNTAHAIFTITRLEGLRGLYAGFLPAVLGSTISWGLYFFFYDKAKQRYARNREEKLSPGYHLASAAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRPYTGLYDAFKTIMREEGLRALYRGIVPGLFLVSHGAVQFTAYEELRRVIVDLKSKEQQMHHQNPDKLLNSVDYAILGATSKVAAILLTYPFQVVRARLQQRPSSDGVPRYVDSWHVVKETARFEGVRGFYKGITPNLLKNVPASSITFIVYENVLKLLKLARKND 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1400 312 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 308 IPR044712 GO:0006862|GO:0055085
Glsi05g1400 312 Pfam Mitochondrial carrier protein 217 306 IPR018108 -
Glsi05g1400 312 Pfam Mitochondrial carrier protein 107 197 IPR018108 -
Glsi05g1400 312 Pfam Mitochondrial carrier protein 9 102 IPR018108 -
Glsi05g1400 312 SUPERFAMILY Mitochondrial carrier 10 300 IPR023395 -
Glsi05g1400 312 Gene3D Mitochondrial carrier domain 103 309 IPR023395 -
Glsi05g1400 312 FunFam folate transporter 1, chloroplastic isoform X1 1 103 - -
Glsi05g1400 312 FunFam Folate transporter 1, chloroplastic 104 310 - -
Glsi05g1400 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 107 195 IPR018108 -
Glsi05g1400 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 304 IPR018108 -
Glsi05g1400 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 98 IPR018108 -
Glsi05g1400 312 Gene3D Mitochondrial carrier domain 1 102 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1400 Glsi-ChrGlsi05 62911641 62917688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1400 30 305 Chloroplast and Mitochondria Gene Families AT2G47490 37.500 9.46e-49 163