Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1396 ATGGCAGGTTTATTCTCATTAGGCGGAGGAGGTAGGGGAGGGAGCAACCAGCACCAAGACCAACCACATAACCCACCCACGGCGGTTCCTCATCCCGAGAGCTTATTTTGGTATAAGAATGAAGATGTATCTTCCTACAGAGGTTTCGAGCTATGGAACCAGCAGCAGGATCAGCAGCTCATCCCTCAAGCGCGCCCGCTACTCCTCCACCAAGATCTTTATTCCTCAGCGGTTGCGTTAGGCGTGGGGCCCAGCAGGCCCTCCATCAACGTCTCCGATGATCAGTCATCTTCGAGATCGGGCATAATGGTAATGCGTTCCACTGGAGGAGGAATAAGCTGCCAAGACTGTGGGAACCAAGCCAAGAAGGATTGCCCACACATGCGGTGCAGGACTTGCTGCAAAAGCCGGGGCTACGACTGCCAAACCCATGTCAAGAGCACTTGGGTTCCGGCTTCCAAGCGTCGCGAGCGACAGCATCAGCAACAACAACTTCAACTTCGCGGGGAGAATCCCAAAAGGCAGAGAGATAATAACCCCAGCGCTTCGGCTCTCCCTAGTACTCACTTGCAAGTCCCCACCCATTCCTCAGAAGCGTTAGAACATGGAAGATTTCCAGCTGTTGTTAGCTCTTCAGCGGAGTTCCGGTGCGTGCGGGTTAGCTCCGTGGACTACGCTGACGACCAATACGCTTACCAAACAGCTGTAAACATAGGAGGACATGTATTCAGAGGAATTCTGTATGACCAAGGCCCAGATAATAATTACATGGATGCCGGGGAAAGCTCTTCCGGTGGCGTTGGAGGAGTTCAACCTTTGAATCTCATTGCCGCGGCCTCCGCCGGCGCTTCTGCTCTACCAACAACCGCTGGGACACTTGTGGATCCTTCTTTGTATGCAGCTCCACTTAACACCTTCATGGCTGGCAGTGGTACGCAATTCTTCCCTCACCCAAGATCTTGA 963 0.5317 MAGLFSLGGGGRGGSNQHQDQPHNPPTAVPHPESLFWYKNEDVSSYRGFELWNQQQDQQLIPQARPLLLHQDLYSSAVALGVGPSRPSINVSDDQSSSRSGIMVMRSTGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQHQQQQLQLRGENPKRQRDNNPSASALPSTHLQVPTHSSEALEHGRFPAVVSSSAEFRCVRVSSVDYADDQYAYQTAVNIGGHVFRGILYDQGPDNNYMDAGESSSGGVGGVQPLNLIAAASAGASALPTTAGTLVDPSLYAAPLNTFMAGSGTQFFPHPRS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1396 320 Pfam Domain of unknown function (DUF702) 111 253 - -
Glsi05g1396 320 MobiDBLite consensus disorder prediction 176 195 - -
Glsi05g1396 320 MobiDBLite consensus disorder prediction 1 33 - -
Glsi05g1396 320 MobiDBLite consensus disorder prediction 152 199 - -
Glsi05g1396 320 NCBIfam LRP1 C-terminal domain 204 252 IPR006511 -
Glsi05g1396 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 304 IPR007818 GO:0003700|GO:0006355
Glsi05g1396 320 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1396 Glsi-ChrGlsi05 62890111 62891662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1396 1 309 C2H2 Transcription Factor Family AT5G66350 48.817 2.91e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Glsi05g1396 DUF702 3.7e-62 No_clan