Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1380 ATGGGACGCGGAAAGATTGAGATCAAGTTGATTGAGAACGCCACGAACAGGCAGGTCACCTACTCCAAGCGACGGAATGGTATTTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCCCTCATCATGTTCTCAAAAAACAACAAGATGCACGAATACATCACCCCTGGCCTTACAACGAAGAAGATCATCGATCAGTACCAGAAGGCTTTGGGGAATGTCGATCTGTGGCGCGCCCACTATGAGAGAATGCTTGAAAACTTGAGAAAACTGAAAGAGATAAACAATAGACTCAGAAGACAGATCAGGCATAGGGTAGGTGCAGATTTGGACGATCTGAGCTTCGAGCAACTACGCAATCTCGAGGATGACATAGTTTCTTCCTCTGGGATGATACGTGAACGAAAGCTTCATGTGATCAAAACTAGGACTGATACCTGCAGGAAAAAGGTTAAAAACTTAGAGCAAGTGAACGGAAATCTACTGGTTGAAATTAAGGAAAAGTGTATGATCCATCCACAATATCTTGTGCACGAGGAAGGAGATGGGGAAACAGCAGGAGCACTGGCGAATGGTGCCTCTAACCTGTATGCATTCTGCCAGCACCATGCCCATCTGAATCTTCAGCACCAAGACTACGATCTGCGCCTTGCTTGA 669 0.4559 MGRGKIEIKLIENATNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLTTKKIIDQYQKALGNVDLWRAHYERMLENLRKLKEINNRLRRQIRHRVGADLDDLSFEQLRNLEDDIVSSSGMIRERKLHVIKTRTDTCRKKVKNLEQVNGNLLVEIKEKCMIHPQYLVHEEGDGETAGALANGASNLYAFCQHHAHLNLQHQDYDLRLA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1380 222 Coils Coil 85 105 - -
Glsi05g1380 222 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g1380 222 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Glsi05g1380 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi05g1380 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Glsi05g1380 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Glsi05g1380 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi05g1380 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi05g1380 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi05g1380 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi05g1380 222 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g1380 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi05g1380 222 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Glsi05g1380 222 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1380 Glsi-ChrGlsi05 62801987 62803566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1380 1 214 MADS-box Gene Family AT3G54340 49.309 3.06e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi05g1380 K-box 2.6e-18 No_clan