Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1376 ATGGACGCTTTCATCCCTCATACAATGCTTTACCAAACTCACCATCCTCTTTTATTTCAATTTTATCCCTCCGCTCCTTCCATATCTGACCTTGCAACCTCATCATCTCTTCCCTCTGTGTTTTCATATCTTCCTATCCTTCAGGCTGAAACACAAATGGAGTGCGTGGAAGCAGCGTTGAAAACCAGTTTTAGGAAAGATATGGCCATGAAATTTAACCCACAGTCTTTTATGGAAGACTGGTCGGCGTTGAATGTGCAAAATGTCGCCCCTTCCGACGACTTTTTTGTAGACGAGCTGCTTGATTTTTCGCATGAAGACGCCCTTGTTGAAGAACCACCCGAAGAAGAACAACAAAAGGGTGGCTCTGTTTCTATTTCTCCTCCACCAGAGGACCAAAGCCACGAAATTTCTAACCCCGCCTCCAGCTACTCTGTCAAAGACGATGTTGGGTCTGTGCCATCTAGCGAACTCAGTGTTCCGGCGGATGATTTGGCAGACTTGGAGTGGTTGTCTCATTTCGTGGAGGATTCCTTCTCGGAATACTCTGCTGCGTACCCCACCGGAACTCTAACGGAAAAGCCCAAGAGCCATGCCCAGGAAGGCCCTGAACTGCAGAGCCAGGTTTCGACCCACCCCTTCTTCAAAACTCCGGTTCCGGCCAAGGCCAGAAGCAAGCGAACGAGGACCGGCGTTCGGGTTTGGCCACTCGGGTCTCCTTCCTTCACCGAGTCATCCTCGAGCTCCACCTCATCTTCCTCCTCCTCGTCTCTAACGAGCCCTTGGTTAATTTACCCCAACGCGGCCCAAAACCTCGAGCAAATTTGCTCCGAGGCCAAACCGCCGGCGAAGAAACCAAAGAAAAAGCCTGCTTTGGACACGGCGGGGACCGGTGTAGCCCAGGCGCCACGGCGGTGCAGCCATTGCGGTGTCCACAAGACGCCGCAGTGGCGAACCGGTCCTATGGGAGCGAAAACGCTGTGCAACGCGTGTGGTGTCCGATACAAGTCGGGTCGGCTCTTACCGGAATACAGGCCAGCATGTAGCCCGACATTCTCGAGCGAATTACACTCGAACCACCACCGTAAAGTGCTGGAGATGCGGCGGAAGAAGGAGGTAACGGATGGAGATGAGTCGGATTTGGGCAGTCCTCCGGCCGTTCCCAGTTTTTGA 1173 0.5294 MDAFIPHTMLYQTHHPLLFQFYPSAPSISDLATSSSLPSVFSYLPILQAETQMECVEAALKTSFRKDMAMKFNPQSFMEDWSALNVQNVAPSDDFFVDELLDFSHEDALVEEPPEEEQQKGGSVSISPPPEDQSHEISNPASSYSVKDDVGSVPSSELSVPADDLADLEWLSHFVEDSFSEYSAAYPTGTLTEKPKSHAQEGPELQSQVSTHPFFKTPVPAKARSKRTRTGVRVWPLGSPSFTESSSSSTSSSSSSSLTSPWLIYPNAAQNLEQICSEAKPPAKKPKKKPALDTAGTGVAQAPRRCSHCGVHKTPQWRTGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVTDGDESDLGSPPAVPSF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1376 390 MobiDBLite consensus disorder prediction 368 390 - -
Glsi05g1376 390 ProSiteProfiles GATA-type zinc finger domain profile. 300 336 IPR000679 GO:0006355|GO:0043565
Glsi05g1376 390 FunFam GATA transcription factor 297 380 - -
Glsi05g1376 390 CDD ZnF_GATA 305 353 IPR000679 GO:0006355|GO:0043565
Glsi05g1376 390 MobiDBLite consensus disorder prediction 110 159 - -
Glsi05g1376 390 MobiDBLite consensus disorder prediction 120 152 - -
Glsi05g1376 390 PANTHER GATA TRANSCRIPTION FACTOR 80 373 - -
Glsi05g1376 390 ProSitePatterns GATA-type zinc finger domain. 306 331 IPR000679 GO:0006355|GO:0043565
Glsi05g1376 390 MobiDBLite consensus disorder prediction 280 303 - -
Glsi05g1376 390 Gene3D - 298 374 IPR013088 GO:0006355|GO:0008270
Glsi05g1376 390 MobiDBLite consensus disorder prediction 239 259 - -
Glsi05g1376 390 SMART GATA_3 300 354 IPR000679 GO:0006355|GO:0043565
Glsi05g1376 390 MobiDBLite consensus disorder prediction 219 259 - -
Glsi05g1376 390 Pfam GATA zinc finger 306 340 IPR000679 GO:0006355|GO:0043565
Glsi05g1376 390 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 302 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1376 Glsi-ChrGlsi05 62779775 62781138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1376 57 390 C2C2-Gata Transcription Factor Family AT5G66320 51.130 1.80e-95 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi05g1376 GATA 1.3e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1376 05 62779775 62781138 Glsi09g0608 09 4215747 4217112 CCT
Glsi09g0608 09 4215747 4217112 Glsi05g1376 05 62779775 62781138 ECH
Glsi05g1376 05 62779775 62781138 Glsi05g1376 05 62779775 62781138 ECH