Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1372 ATGGAACAACCAGATGAACAGCTACACGACCCCTCCCTTCGACAAGGGGAAAGACAAAGCTTTAACTGTTCGGATACCTCTACGGAGCCGATGAGCATCGATCCATGCCAGAGTATTAGGGGTATGCAGGATTCTCAGCTTGCTGGAGTTCCGGTCTCACTTGCTCGCGATGTTGACCTGCCTGACACACATGATCGTTGCTTGCCCAATATGGACCTGAAGATAGAGGTCAAGCTTCCGGACGGTTGTGCCGGGAAAAGAAAACGAGGTCGGCCGGCGAGGGGTGTCCCGAAAACACCGCCATTGAGGAAGAAGAGGGACGAGGAGGATGTTTGTTTTATTTGTTTCGATGGCGGGAGCCTTGTTCTCTGTGATCGCCGGGGTTGCCCTAAAGCGTATCATCCCGCATGTATTAAGCGAGACGAGTCATTCTTCCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCATTTGTCGGAAAGCATCCCATTATATGTGCTATACTTGTACATATTCTTTGTGCAAGGGTTGTACAAAAGATGCAGATTATCTCTGTGTTCGAGGAAATAAAGGTTTATGTGGAATATGCATGAGAACTATAATGCTTGTTGAGAACAGTGCACAGGGAAATAAGGAAATGGTAATGCTAAACTTTCCTGTCTTGGCTGGTCACTTGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGTGTATTGGGTATACTTGAAAGAGAAGCTATCTTTATCGTTAGATGAGCTCCTTCGAGCTAAAAGTCCGTGGAAAGGAGCTGCTGCTATGGGTTGTAAGGTCGAAGTTCCCCATGAACCTCCTCTTCATAAAGATGACAAAGGTTCCGGTTCTGAAAATTCTTGTATAGACATAGAATCAAATAATTTAGAAGACAATAAGTCTATAAGACAGCCAAGGCTTCTTAGTAAAGAGGATTGCGCAAATATGAAAACTTCAGGTGGTGACAATGGTGTGTCTATGGCTGAATGCACAAAATGGGCATCAAAGGAGCTTTTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCTCTGCTATCTCAATTTGATGTCCAGGAACTTTTACTGGAGTATGTAAAGAAAAACAATCTTCGTGATCCTCGACAAAAATGCCAAATTGTTTGTGATTTAAGGCTAGCAAATTTGTTTGGGAAAGCACGTGTAGATCACATTGAAATGTTAAAGCTTCTTGAATATCACTTTCTTATAAAAGATGATGCCTCTGCCAATAATACTGTAAGATCAGGAATTATTGATGCTGTTGTTAGCGAGGTTGAGGCTAATGACAATCACAATAGCCAGCTGGTGGTAGCTAATGATAAGAGATGTAAAACACGTAAAAAGGCTGATGTGCGTGTGCTGCACAATAAACCAAATGCACCTGCTGCAATAAATGCTCATAACATCAGCTTGATTTACTTGCGCCGCAATCAGATGGAGAATCTACTTGAAGATGCTGAGAAGTTTAATGACAAGGTTGTTGGTTCAATTGTCCGGATAAGAATCTCTAGTAGTGATAAAAAGCAAGAGATGTATAGGCTTGTCCATGTTGTAGGTACAAGAAATGCTGCTGAACCATACAATATTGGCACAAGAACAACAGACATGGTGCTTGAAATTTTAAATTTAAACAAGAAAGAGGTCATACCAATAAATGAAATTTCAAATCAGCAGTTCTCTGAGGACGAATGTAGACGTTTACGCCAGAGTATAAGATATGGGTTTTCACAGAGATTGACTGTGGGAGAGATTCTGGACAAAGCATTGATACTTCAAGCAGTGAGAGTTAATGATTTGCTGGAAGCTGAAATATTGCGGCTTAACCATCTTCGTGATAGAGCAAAGTGCGTGGAGAAATTTCAGTTATTGAACTCACCTGAGGAACGACAAAGAAGGCTTCAAGAAATTCCAGAAGTATACTCTGATCCGAATATGGATTCAATCTCTGAGTCTGATGAAGATGCTGAAAAGTCAGATGAAAAACAAGATTACAATATAAGGTCAAAATATTCTGGATTTAATAGAAGAGAAAGGGAGCCTAGTTCACCAAGAAGTCAGGGTGGTGTATTAAATGATGTTGGATGCAGAGCACAAGACTTTTTGGCCACCACCCAGGAGCAGATTGGGAATATATGTACAATAAAGAACCGGACCAGCACCAATGATGCAGCAATTGGTGATAGCAATAATGTAGGAGTGGCGACATCAGGAACATCTGGTCGAGCATCAGAAATTTCATCATTGCCTCTCTCTACAGGGATGGAGCAGCCATTTAATGATTTTGAAACCAATAAATTATGGCACTATCGGGATCCATCTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAATTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCTGATCTCAGAATATGGAGGATAACTGAAAAACAAGATGACTCTATATTGTTGACTGATGCATTAAGTGGGAAGTGTTGTAAAAATGAGTCATTTCCATACAACAGCCAACTGCTGTCTTTAGGGGTCAGGGATGCATTGGGTAATAAAGATGATATTGATTTTCCCAGTCCCACTCCTGTAACTAGTTCCTCAAATTGCTGGGATTCCACGTCTACCTTTGTTCCTGTTTCAAAAACATCACCAAAAAACCCAGAAAGTGATAACCTAGAGTTGCCTAGTCACACCCCTAAGCCAAATAATTCTGAGTCCGTATGTCAGTCTGCCGAAAACAAACAGTCTGCTTCTTCAAATGTTCCTGTTCAAGATGCTGGTCCTAGCTGGAGTACTGCTTCCAGCTTAGTTGGTGGTGGGACACCACTTCCTGAAGTGACTGTTGAATGGAGAAGATGTTCACCAGCCCCACCTAATCCTTCTGTTGAGGAATGGGACTCCAATCTTGTCTCTGCATCTTCATTGAAGCAAGCTGAAAATGTTGGTGATTGTACTGCTACTCCATCTTCAATATGTGATCAACTAACACACTCTTCCCCTTCCCATGCTGTCTGTAATACGTCTACATGGCAGGCAATTGATTTTGGCGATGAATCAGTTTCTGATCTGTTGGCAGAAGTGGAGGCAATGGCATCTCTTGGTGGCTTGGAATCTCCCACATCGATTATGAATTGTGGTGAGGAATTGACCGAGGGTTCTAAAACTGATTGTCTGAGTTCTGCAGAGGGGCTTAGCCCTATGCCTGATGCAGGTAAAGGTGATGCGCTGAGCTCCACAGGTGATTTACAATTTCCATCTCAATCCACAGCAGCAGATGTACCATTATGCCAAGCAGATGCACATCACCATCAAAGAATATCTGGAGGGCATTCCTCTAGAAGTTCTGAAGTTGAGGTTGGCACAAAGGACATTTGTGTTTCAGGTAATCAGTGGAAATCAGGTTCAGAAAGTTCATCCACAGCAACTTGGGACATGGCTACAGATACCACTTGGAGACTTGGGTCAGAGAGTACACGTGGTTGGGAGGCATCTCAGGGAAATACAAACTTGGGCTGGGGTGGTATGGATCAAGGAAATGCAAACTTGAGTTGGGGAGTGGGACACGGGACAGTGCAGGAAAACAGGAGCATAAACACGTACACTTCCATAGGAACTCCTTGCCTTTTGGGAAGCCAAACAAGATATGGCAGTGGCAGTGGCAGTGGCGGTGGCAGTGATCGATTTTCTGCTCCCAGAGATTGGGATTTTCATGGTTCTGGTAGGGGTAGAACAGTGTGGAACAGGCAACCATTATTTGGTATTGGAAATGGAGGCTCCCAAAGGCCTCCGCCTAAAGGGCAGCGAATTTGTAAATTTTACGAAAGTGGGCACTGTAAGAAGGGAGCATCATGTGATTACTTGCACCCATGA 3903 0.4302 MEQPDEQLHDPSLRQGERQSFNCSDTSTEPMSIDPCQSIRGMQDSQLAGVPVSLARDVDLPDTHDRCLPNMDLKIEVKLPDGCAGKRKRGRPARGVPKTPPLRKKRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDESFFRSKAKWNCGWHICSICRKASHYMCYTCTYSLCKGCTKDADYLCVRGNKGLCGICMRTIMLVENSAQGNKEMVMLNFPVLAGHLCEVDFDDKSSWEYLFKVYWVYLKEKLSLSLDELLRAKSPWKGAAAMGCKVEVPHEPPLHKDDKGSGSENSCIDIESNNLEDNKSIRQPRLLSKEDCANMKTSGGDNGVSMAECTKWASKELLEFVAHMKNGDTSLLSQFDVQELLLEYVKKNNLRDPRQKCQIVCDLRLANLFGKARVDHIEMLKLLEYHFLIKDDASANNTVRSGIIDAVVSEVEANDNHNSQLVVANDKRCKTRKKADVRVLHNKPNAPAAINAHNISLIYLRRNQMENLLEDAEKFNDKVVGSIVRIRISSSDKKQEMYRLVHVVGTRNAAEPYNIGTRTTDMVLEILNLNKKEVIPINEISNQQFSEDECRRLRQSIRYGFSQRLTVGEILDKALILQAVRVNDLLEAEILRLNHLRDRAKCVEKFQLLNSPEERQRRLQEIPEVYSDPNMDSISESDEDAEKSDEKQDYNIRSKYSGFNRREREPSSPRSQGGVLNDVGCRAQDFLATTQEQIGNICTIKNRTSTNDAAIGDSNNVGVATSGTSGRASEISSLPLSTGMEQPFNDFETNKLWHYRDPSGKVQGPFSMLQLYKWNASGHFPPDLRIWRITEKQDDSILLTDALSGKCCKNESFPYNSQLLSLGVRDALGNKDDIDFPSPTPVTSSSNCWDSTSTFVPVSKTSPKNPESDNLELPSHTPKPNNSESVCQSAENKQSASSNVPVQDAGPSWSTASSLVGGGTPLPEVTVEWRRCSPAPPNPSVEEWDSNLVSASSLKQAENVGDCTATPSSICDQLTHSSPSHAVCNTSTWQAIDFGDESVSDLLAEVEAMASLGGLESPTSIMNCGEELTEGSKTDCLSSAEGLSPMPDAGKGDALSSTGDLQFPSQSTAADVPLCQADAHHHQRISGGHSSRSSEVEVGTKDICVSGNQWKSGSESSSTATWDMATDTTWRLGSESTRGWEASQGNTNLGWGGMDQGNANLSWGVGHGTVQENRSINTYTSIGTPCLLGSQTRYGSGSGSGGGSDRFSAPRDWDFHGSGRGRTVWNRQPLFGIGNGGSQRPPPKGQRICKFYESGHCKKGASCDYLHP 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1372 1300 SMART swib_2 337 424 IPR019835 -
Glsi05g1372 1300 SUPERFAMILY CCCH zinc finger 1275 1299 IPR036855 GO:0046872
Glsi05g1372 1300 ProSiteProfiles GYF domain profile. 782 836 IPR003169 GO:0005515
Glsi05g1372 1300 SMART rtf1 481 591 IPR004343 GO:0003677
Glsi05g1372 1300 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 872 1300 - -
Glsi05g1372 1300 MobiDBLite consensus disorder prediction 14 33 - -
Glsi05g1372 1300 CDD GYF 782 837 IPR003169 GO:0005515
Glsi05g1372 1300 MobiDBLite consensus disorder prediction 281 300 - -
Glsi05g1372 1300 FunFam Zinc finger CCCH domain-containing protein 19 101 201 - -
Glsi05g1372 1300 MobiDBLite consensus disorder prediction 653 708 - -
Glsi05g1372 1300 MobiDBLite consensus disorder prediction 1 33 - -
Glsi05g1372 1300 SUPERFAMILY FYVE/PHD zinc finger 106 156 IPR011011 -
Glsi05g1372 1300 ProSiteProfiles Zinc finger C3H1-type profile. 1275 1300 IPR000571 GO:0046872
Glsi05g1372 1300 ProSiteProfiles Plus3 domain profile. 481 614 IPR004343 GO:0003677
Glsi05g1372 1300 SUPERFAMILY Plus3-like 482 610 IPR036128 GO:0003677
Glsi05g1372 1300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 199 IPR013083 -
Glsi05g1372 1300 MobiDBLite consensus disorder prediction 888 949 - -
Glsi05g1372 1300 SUPERFAMILY GYF domain 778 835 IPR035445 -
Glsi05g1372 1300 CDD PHD5_NSD 111 156 - -
Glsi05g1372 1300 ProSiteProfiles SWIB/MDM2 domain profile. 338 421 IPR003121 -
Glsi05g1372 1300 MobiDBLite consensus disorder prediction 888 952 - -
Glsi05g1372 1300 Pfam GYF domain 785 825 IPR003169 GO:0005515
Glsi05g1372 1300 Gene3D - 784 839 IPR035445 -
Glsi05g1372 1300 ProSiteProfiles Zinc finger PHD-type profile. 109 175 IPR019787 -
Glsi05g1372 1300 Gene3D SWIB/MDM2 domain 334 429 IPR036885 -
Glsi05g1372 1300 SMART gyf_5 783 838 IPR003169 GO:0005515
Glsi05g1372 1300 ProSitePatterns Zinc finger PHD-type signature. 112 172 IPR019786 -
Glsi05g1372 1300 MobiDBLite consensus disorder prediction 668 700 - -
Glsi05g1372 1300 Pfam Plus-3 domain 486 589 IPR004343 GO:0003677
Glsi05g1372 1300 SMART PHD_3 111 157 IPR001965 -
Glsi05g1372 1300 CDD SWIB-MDM2_like 344 419 - -
Glsi05g1372 1300 SUPERFAMILY SWIB/MDM2 domain 343 420 IPR036885 -
Glsi05g1372 1300 MobiDBLite consensus disorder prediction 281 296 - -
Glsi05g1372 1300 Gene3D - 482 611 IPR036128 GO:0003677
Glsi05g1372 1300 MobiDBLite consensus disorder prediction 84 103 - -
Glsi05g1372 1300 Pfam SWIB/MDM2 domain 346 419 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1372 Glsi-ChrGlsi05 62750732 62758736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1372 109 189 PHD Transcription Factor Family AT4G14920 34.568 2.82e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Glsi05g1372 Plus-3 2.3e-23 No_clan