Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1367 ATGCGAACGCTTTGTGACGCTTGTGAGAGCGCGGCCGCCATCGTATTCTGCGCTGCTGATGAGGCCGCACTCTGCCGTGCCTGCGACGAGGAGGTTCACATGTGCAATAAGCTAGCTAGCCGGCATATAAGGGTTGGCCTTGCCAGTCCAAGTGATGTGCCGCGCTGTGACATTTGTGAAAATCTACCTGCTTTCTTTTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAATGTGATATGATAGTTCATGTTGGAGGTAAAAGAACACATGGAAGATATCTTCTGTTTAGGCAGAGAGTTGAGTTTCCTGGAGATAATCCTGGTCAGCCAGAAAATCCAGGTTCACAACCTCTAGAACCAGTTGAGACTAAAAGAGGACAAAATCCACAGCTCAAAATAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCTCTGGTTCCGACACCAGAACATGATGCTGATGGGCATGCCAAGATGGAAATTAAAATGATTGATTTGAATATGAAGCCTCAAAAAATACATGAACAGGGGTCAAATAATCAGCCATAA 555 0.4505 MRTLCDACESAAAIVFCAADEAALCRACDEEVHMCNKLASRHIRVGLASPSDVPRCDICENLPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDNPGQPENPGSQPLEPVETKRGQNPQLKIKMGEKQQNHRMPLVPTPEHDADGHAKMEIKMIDLNMKPQKIHEQGSNNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1367 184 CDD Bbox1_BBX-like 56 96 - -
Glsi05g1367 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Glsi05g1367 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 143 - -
Glsi05g1367 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Glsi05g1367 184 Gene3D Classic Zinc Finger 2 91 - -
Glsi05g1367 184 MobiDBLite consensus disorder prediction 102 128 - -
Glsi05g1367 184 FunFam B-box zinc finger protein 19 2 92 - -
Glsi05g1367 184 CDD Bbox1_BBX-like 4 47 - -
Glsi05g1367 184 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Glsi05g1367 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Glsi05g1367 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Glsi05g1367 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Glsi05g1367 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1367 Glsi-ChrGlsi05 62717805 62719974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1367 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 60.109 2.79e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Glsi05g1367 zf-B_box 9.7e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1367 05 62717805 62719974 Glsi09g0615 09 4264881 4266911 CCT
Glsi09g0615 09 4264881 4266911 Glsi05g1367 05 62717805 62719974 ECH
Glsi05g1367 05 62717805 62719974 Glsi05g1367 05 62717805 62719974 ECH