Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1362 ATGAAAGTTTTCGTTTTGGGGTCAGCATTTTTCTCAGTCCGTCAAGGAAAAAGGGTCAGAGTTGCCATGGAAATTCTCGACAAAAAGACAAACGAGTCAGAACCCCATGCGGTGGGTATTAATGGTGGTGGTGAATTTGATGCAGTACCAGTTGCTATGATGGAGTCAATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTACTATCTCAGGAAGAAAGTAGCTTCTCAGAAGATTGATCTTGACGTTATCAGAGAGATCGATCTATATCGCATTGAACCATGGGATCTCCAAGAAAGATGCAGGATCGGGTATGAGGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAGAAGTATCCAACTGGGACCAGAACTAACAGAGCTACCGTGGCTGGGTTCTGGAAGGCAACAGGAAGAGACAAGGCAGTGTACGACAAAGCCAAACTCATTGGAATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACTAAAAACTGATTGGATCATGCATGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGGAAGAAGGATGGGTTGTATGCAGAGCATTCAAGAAAAGAACCAATGGCCTAACGAAGACCATTGAAGGATGGGATTCAGGTTACTTCTATGAGGAGACAAGTGGGGCGAGCTCGGGGGTCGACCCCATTGATTTCATCTCAAGGCAGCCTCAGAATTTTTTAGCCCAAAATTTCATGTGTAAGAAAGAGATAGAAGCGGAGAACTTGAGTTTCATGCACTCAGACCAATTTGTACAGCTTCCTCAGCTAGAAAGTCCGTCTTTGCCATTAATAAAGAGGCCCCCAGTGTCCTTAATATTAGATAATAATGAAGAAGATAACCAAAACAGGTTAGCCAATAACAACGCCAAAAGGGTGACTGATTGGAGGGCTCTTGACAAATTTGTGGCATCTCAATTGAGTCAAGAAGACAGGCATGAAACTGATGGAGTGTCAAGCTTTGAAACCCATAACAGCTCGGATATGGCATTGCTGCTTCTGCAGAGTAGTAGGGATGAAGGAAACAAATTAAGCCCATTTTTAAGTGCAAGCTCAGACTGTGACATTGGGATATGCGTATTTGAAAAATGA 1164 0.439 MKVFVLGSAFFSVRQGKRVRVAMEILDKKTNESEPHAVGINGGGEFDAVPVAMMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAVYDKAKLIGMRKTLVFYKGRAPNGLKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTNGLTKTIEGWDSGYFYEETSGASSGVDPIDFISRQPQNFLAQNFMCKKEIEAENLSFMHSDQFVQLPQLESPSLPLIKRPPVSLILDNNEEDNQNRLANNNAKRVTDWRALDKFVASQLSQEDRHETDGVSSFETHNSSDMALLLLQSSRDEGNKLSPFLSASSDCDIGICVFEK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1362 387 FunFam NAC domain-containing protein 70 214 - -
Glsi05g1362 387 ProSiteProfiles NAC domain profile. 61 210 IPR003441 GO:0003677|GO:0006355
Glsi05g1362 387 Pfam No apical meristem (NAM) protein 62 189 IPR003441 GO:0003677|GO:0006355
Glsi05g1362 387 SUPERFAMILY NAC domain 55 210 IPR036093 GO:0003677|GO:0006355
Glsi05g1362 387 Gene3D NAC domain 70 214 IPR036093 GO:0003677|GO:0006355
Glsi05g1362 387 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 58 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1362 Glsi-ChrGlsi05 62673929 62677099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1362 54 386 NAC Transcription Factor Family AT2G18060 63.859 1.12e-162 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi05g1362 NAM 8.1e-38 No_clan