Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1360 ATGTCTTCCACCGGAGAAGGTGATTCCCCCAACGTTGAACAAACAGCAGAGGAGCCTAAGCCTGTTATGGAGAAGAAGCCCAAGGCTCCTAAAGAAAAGAAGCCCAAACAAACCAAAACGGCTTCTCATCCTCCATATTTTCAGATGATTAAGGAAGCCTTAATGGCTCTGAATGAGAAGGGTGGTTCCAGTCCCTACGCTATAGCCAAGTACATGGGAGAGAAGCATAAGTCGGTTCTCCCTGCAAATTTTAGGAAGATCTTGGCTCTGCAGCTCAAGAACCAAGCTGCGAGAGGAAAGCTCGTCAAGGTTAAGGCTTCGTACAAGTTATCTGAAGCTGGCAAGAAGAATGCGGACAGCACTACCAAGGTCGCGGAGTCCACCACAGACAGGAAGCTGCGCTCAAAACGAAGTAAATCTACAACCGCAACTGTAGCTTCTGCTCCGAAGGCCAAGGCGTCTAAGAAAGTTGAGAAGGGAGCGAAGAAGGTTGGGGTGAAGAAGACAAAGAAATCAACCCCTGCGAAGCCGAAGCAGCCTAAGTCTATAAGGTCTGCTTCCAAAAGGGCTAGAAAAGCTACTGCTTCATCTTCATGA 597 0.4824 MSSTGEGDSPNVEQTAEEPKPVMEKKPKAPKEKKPKQTKTASHPPYFQMIKEALMALNEKGGSSPYAIAKYMGEKHKSVLPANFRKILALQLKNQAARGKLVKVKASYKLSEAGKKNADSTTKVAESTTDRKLRSKRSKSTTATVASAPKAKASKKVEKGAKKVGVKKTKKSTPAKPKQPKSIRSASKRARKATASSS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1360 198 PANTHER HISTONE H1 13 180 - -
Glsi05g1360 198 MobiDBLite consensus disorder prediction 161 188 - -
Glsi05g1360 198 MobiDBLite consensus disorder prediction 1 47 - -
Glsi05g1360 198 SUPERFAMILY "Winged helix" DNA-binding domain 39 119 IPR036390 -
Glsi05g1360 198 CDD H15 40 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi05g1360 198 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 42 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi05g1360 198 Pfam linker histone H1 and H5 family 43 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi05g1360 198 SMART h15plus2 40 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi05g1360 198 MobiDBLite consensus disorder prediction 111 198 - -
Glsi05g1360 198 PRINTS Histone H5 signature 56 73 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi05g1360 198 PRINTS Histone H5 signature 29 50 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi05g1360 198 PRINTS Histone H5 signature 138 152 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi05g1360 198 PRINTS Histone H5 signature 169 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi05g1360 198 MobiDBLite consensus disorder prediction 18 39 - -
Glsi05g1360 198 Gene3D - 36 123 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1360 Glsi-ChrGlsi05 62649569 62650256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1360 30 110 Single Myb Histone (SMH) Gene Family AT1G72740 37.037 3.88e-08 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1360 05 62649569 62650256 Glsi05g1360 05 62649569 62650256 ECH