Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1357 ATGAAGCGGACAAGGAAATCCAACAGGGTTTCGTGGGCTCCTGGATTTAATCTGTGTCAGGTGAAATTGTTCCTATCTGAGGATTGCCCTTCAAAAGTTGGCCAGAAATCTCAAGATCATCTTCAAGCGAAGATGTCATCACATTCAAGTACTAATGAATATGATGATTTGCCTCCAGGGTTTGAAGGCAATCAGTTTTTTAACCAATCAAAGGATGAACTCTCCAACATTTCTCAGATTAAATGGAAAGCCCCTCCCTTGTTTGTTTTCAGTTATAATTGGCATGTTGTAGCTGGTGAAGAAAGTAGGGAGAAAGAGGATCAAAAGCTGAGAGAAATGAGAGTACTTGAAGCAGTTTATCCTCGTCCTTCTGCCATTCCTCCTAGCCCTTCTGTTTCTTTAGATATAGAGGACGAAGATTATGATGATAACCTCACTCCTCTCATCCCTATTATTCCTATTGAGGAAGAAGAGCTTATGGATATTAATCCTGAATTGCCAGCAACAATAGACTCCTCCGCTACTTTGCCGTCACAAAGCTTGCACCAACATGTATCAGGAACTAGTACACCCATAAGTTCACAACATATTACCCCTCCTACTCTTGCCTCACCTGGGACATCTGGTTTGGAAGCAGATTTTGCTGCAGCCTCTGCTGTTGTTGCTGCCATCATGAAGAATAATGAACAAGGAAGCATGATTGACATGGATCTACTCGTTAGAATATTCAATGATCCAATAATGATTGAGAAACTGATTAACGATCATAGAGCTGCAGCGACCTCTTTAAGTGCATCTTCAAATACAGTGTGTGTACCCGCTTCTGGTTTGACGTGTGCTACTCCATCAATTCAATTGTCTCCACCTCTACCCGATGATCAAACATCTGGGGTTGCACCCACAAGTTCAGTGGGTTTATCACCTGATTCAGCGTTGAAACCGGCAACTCCATCAATTCCAATGTTGCATACACTTGATAAGCTAGCAGCGTCGTCACTCCCATTGTCTAGGCCCATGGCTAGTAAACCAGCAACTCTCTCAGTTCCATTGCCTACACATAAAATTACACCTGATATGCACAGGCCTGTGAACAAAAACATTCACCATTTGTCAAATGGAGTGCTGCCCACTTTAAATACCCAACCTCCTGAACAAGAAACTGTTGTAGCATCCGGGGTGAAGCGAGCAGCGTCACTGGCTTCTATTTCATCCAGTGAACCAAGTACGGTCTCGTTACCTTCAGCTGGTGTGAACTTGCATGCAGTAGCAAATCAGGTGCGACCAACTGCTAGCACAATGGCTTACCGACCAAGTACAGCTACTGCTTTTCCTATGAAGGAAGCTCATCCTGCGAGGGATATGAGCTATTTTAAAAACCTCGTTAGGCAGCATGGTGCTGATATGCAAGAGACACAGGACTCCCAAATAGGTATCCGTCAAAGTAACTTCCAAGATTTGAAACCGGTACATAACAATAAACCAGGAGATGTGAAATTCAAAACACAGAAACCTTGCATATACTTTAAAAGCTCAAGGGGGTGTCGAAATGGTTCCAATTGCCCCTATCAACATGACATGTCACGACAGTGGGGAGCTTTAAATATCCTAGGGGCCCAGAATGCAAAAAGATTTAAACCCGGACCAGAAATTAAGGGTAGAACATAA 1665 0.4324 MKRTRKSNRVSWAPGFNLCQVKLFLSEDCPSKVGQKSQDHLQAKMSSHSSTNEYDDLPPGFEGNQFFNQSKDELSNISQIKWKAPPLFVFSYNWHVVAGEESREKEDQKLREMRVLEAVYPRPSAIPPSPSVSLDIEDEDYDDNLTPLIPIIPIEEEELMDINPELPATIDSSATLPSQSLHQHVSGTSTPISSQHITPPTLASPGTSGLEADFAAASAVVAAIMKNNEQGSMIDMDLLVRIFNDPIMIEKLINDHRAAATSLSASSNTVCVPASGLTCATPSIQLSPPLPDDQTSGVAPTSSVGLSPDSALKPATPSIPMLHTLDKLAASSLPLSRPMASKPATLSVPLPTHKITPDMHRPVNKNIHHLSNGVLPTLNTQPPEQETVVASGVKRAASLASISSSEPSTVSLPSAGVNLHAVANQVRPTASTMAYRPSTATAFPMKEAHPARDMSYFKNLVRQHGADMQETQDSQIGIRQSNFQDLKPVHNNKPGDVKFKTQKPCIYFKSSRGCRNGSNCPYQHDMSRQWGALNILGAQNAKRFKPGPEIKGRT 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1357 554 ProSiteProfiles Zinc finger C3H1-type profile. 499 527 IPR000571 GO:0046872
Glsi05g1357 554 MobiDBLite consensus disorder prediction 286 312 - -
Glsi05g1357 554 MobiDBLite consensus disorder prediction 182 204 - -
Glsi05g1357 554 MobiDBLite consensus disorder prediction 286 309 - -
Glsi05g1357 554 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1357 Glsi-ChrGlsi05 62631175 62635968 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi05g1357 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1357 05 62631175 62635968 Glsi05g1357 05 62631175 62635968 ECH