Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1347 ATGGAACCTCAACAACAACAACAGACCCAACACTCACCAAACGAGGATGGCGGCAGTGGAAAAGGGGGCTTTCTGTGCAGGCAAAGTAGTACACGGTGGACTCCCACCACCGACCAGATAAGAATATTGAAGGACCTTTACTACAACAATGGAGTTAGGTCCCCAAATGCAGAGCAGATTCAGAGGATCTCTGCTAGGCTGAGGCAGTACGGAAAGATTGAAGGCAAAAATGTCTTTTACTGGTTCCAGAACCACAAAGCTCGAGAAAGGCAGAAGAAAAGGTTCACTTCTGATGCCCCCATGCAAAGAGGGGCAACTAATGCTGCTTGGAAACCTGAAGAACCCATTCACCCCAAGTATTCTAACATATCATCTGCTGGTGTTTCTTGTGCATCATCTTCTTCTGCTGGCATGGTTACTCTGGGCCAGATGGGAAACTATGGGTATGGATCTGTGACAATGGAAAAGTGTTTTAGGGACTGCTCAATATCAGCTGGGGGTAGCAGTGGCCATGGTGGTGGTGGTACCAATATAAACCACAATTTGGGATGGGTTGGTGTGGATCCATATTCCTCAACCTACACTAATCTTTTTGACAAGACAAGGCCAACTGAAGAAACCCTGAAAGAACAGGAAGAAGATGATGTCCCTGAGATTGAAACCCTCCCCCTGTTCCCCATGCACGGTGAGGACATCCATGGCTATTGCAACGTCAAGTCTGATTCATCTTACTATGGCGGTGGTTGGTATCAGGCTGAAGATGGGTTCAAGAACGGTTCTCGTACTTCCCTGGAGCTTAGTCTGAACACCTACACCCGCAGATCTCCAGATTCCAGTTGA 840 0.4762 MEPQQQQQTQHSPNEDGGSGKGGFLCRQSSTRWTPTTDQIRILKDLYYNNGVRSPNAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDAPMQRGATNAAWKPEEPIHPKYSNISSAGVSCASSSSAGMVTLGQMGNYGYGSVTMEKCFRDCSISAGGSSGHGGGGTNINHNLGWVGVDPYSSTYTNLFDKTRPTEETLKEQEEDDVPEIETLPLFPMHGEDIHGYCNVKSDSSYYGGGWYQAEDGFKNGSRTSLELSLNTYTRRSPDSS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1347 279 ProSiteProfiles 'Homeobox' domain profile. 26 92 IPR001356 GO:0003677
Glsi05g1347 279 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 10 272 IPR044555 GO:0003700|GO:0099402
Glsi05g1347 279 Pfam Homeodomain 30 91 IPR001356 GO:0003677
Glsi05g1347 279 MobiDBLite consensus disorder prediction 1 16 - -
Glsi05g1347 279 Gene3D - 30 96 - -
Glsi05g1347 279 CDD homeodomain 31 93 IPR001356 GO:0003677
Glsi05g1347 279 SMART HOX_1 28 96 IPR001356 GO:0003677
Glsi05g1347 279 MobiDBLite consensus disorder prediction 1 30 - -
Glsi05g1347 279 SUPERFAMILY Homeodomain-like 13 93 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1347 Glsi-ChrGlsi05 62583516 62584953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1347 24 231 Wox Gene Family AT2G17950 42.231 2.29e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Glsi05g1347 Homeodomain 2.1e-17 CL0123