Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1343 ATGGGTGCCTGCTTTTCTGCCATTAAGGTCAGTGGCTCAAACAGCACTACCACAGCTGTCGGCGCCACCACCATCGTTAATCACAATCGCAAAGAGAGTGCAAAGCCTCAATCGCGGACAACCCCCGCCACTGCACATAAACCACAAGGATCAAACGATCAGCGACCTAAAGTACCCAATGACACCCAGAACAGTCAGCAGAAGAAGAATTTCCAGCATCATAGGCCCAAAGACAAGTCAAATTCCAAGCGCCAACCGTGCGGAAAGATCACAGATTTCGGCTATGACAAAGATTTTAATGAGCGATACTCGCTTGGAAAATTGTTGGGACATGGACAATTTGGTTACACATATGTTGGAATAGATAAAGCTAATGGGAATCGGGTGGCCGTGAAGCGAATTGACAAGAGCAAGATGGTCCTTCCTATAGCTGTCGAGGACGTTAAGCGAGAGGTCAAGATACTGAAACAACTTACAGGCCATGAGAATGTGGTTCAGTTCTACAATGCTTTTGAGGATGATTCATATGTATACATAGTAATGGAGTTATGTGAGGGTGGAGAACTGTTAGATCGGATATTGGCCAAGAAAGACAGCCGTTATAGTGAAAAAGATGCAGCAGTGGTTGTAAGGCAGATGCTCAAAGTTGCAGCAGAGTGTCATTTACATGGTTTGGTACACCGGGACATGAAACCAGAGAATTTTCTTTTCAAATCAACCAGAGAAGATTCGCCTTTAAAGGCTACAGATTTTGGTTTGTCAGATTTCATTAAACCTGGAAAGAAGTTTCAAGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGTTGAAACGCAAGTCAGGTCCTGAATCTGATGTATGGAGTATTGGTGTAATTACATACATATTGCTTTGTGGGAGGCGTCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCCTACGGAACAAGCCTGATTTCCGCCGGAAACCATGGCCTACAATAAGTAATCCTGCAAAAGATTTCCTGAAGAAATTGCTAGTAAAGGATCCTCGTGCAAGATTAACTGCTGCTCAGGCTTTATCTCATCCATGGGTTAGAGAGGGAGGAGAGGCACTGGAGATCCCTATTGATATTTCTGTCCTAAGCAACATGCGGCAGTTTGTGAAATTTAGTAGATTGAAACAATTTGCACTAAGGGCATTGGCTAGCACGCTTAATGAAGAAGAGTTGGCTGATCTCAGAGATCAATTTGATGCAATAGACGTGGACAAAAATGGTTCTATTAGTCTAGAGGAGATGAGACAGGCTCTTGCAAAAGATATCCCTTGGAAGTTGAAAGATTCAGGCGTACTAGAGATATTGCAAGCGATAGACTGCAACACAGATGGACTTGTGGATTTCTCCGAGTTTGTGGCTGCTACAATACATGTGCATCAATTGGAGGAACATGACTCAGATAAGTGGCAGAACAGGTCACAAGCTGCTTTTGAGAAATTCGACATAGACAAGGATGGCTATATTACTCCAGAAGAACTTAGAATGCATACGGGATTAAGGGGCTCCATTGATCCACTGCTTGAGGAAGCTGATATTGACAAAGATGGAAAAATAAGCCTATCAGAATTCCGTAGACTTCTTAGAAATGCAAGCATCAGTTCACGAAATGTGACAAGCCCAACAATGAATCGGCGGAGGAACTTAGATTAG 1701 0.4327 MGACFSAIKVSGSNSTTTAVGATTIVNHNRKESAKPQSRTTPATAHKPQGSNDQRPKVPNDTQNSQQKKNFQHHRPKDKSNSKRQPCGKITDFGYDKDFNERYSLGKLLGHGQFGYTYVGIDKANGNRVAVKRIDKSKMVLPIAVEDVKREVKILKQLTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYSEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNPAKDFLKKLLVKDPRARLTAAQALSHPWVREGGEALEIPIDISVLSNMRQFVKFSRLKQFALRALASTLNEEELADLRDQFDAIDVDKNGSISLEEMRQALAKDIPWKLKDSGVLEILQAIDCNTDGLVDFSEFVAATIHVHQLEEHDSDKWQNRSQAAFEKFDIDKDGYITPEELRMHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRNASISSRNVTSPTMNRRRNLD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1343 566 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Glsi05g1343 566 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Glsi05g1343 566 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Glsi05g1343 566 ProSiteProfiles EF-hand calcium-binding domain profile. 406 441 IPR002048 GO:0005509
Glsi05g1343 566 ProSiteProfiles Protein kinase domain profile. 103 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1343 566 PANTHER SERINE/THREONINE-PROTEIN KINASE 83 537 - -
Glsi05g1343 566 Gene3D Transferase(Phosphotransferase) domain 1 189 381 - -
Glsi05g1343 566 FunFam calcium-dependent protein kinase 28-like 189 382 - -
Glsi05g1343 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Glsi05g1343 566 Gene3D - 389 543 - -
Glsi05g1343 566 FunFam Calcium-dependent protein kinase 28 404 473 - -
Glsi05g1343 566 ProSitePatterns EF-hand calcium-binding domain. 419 431 IPR018247 -
Glsi05g1343 566 ProSiteProfiles EF-hand calcium-binding domain profile. 523 550 IPR002048 GO:0005509
Glsi05g1343 566 MobiDBLite consensus disorder prediction 25 89 - -
Glsi05g1343 566 SUPERFAMILY Protein kinase-like (PK-like) 99 377 IPR011009 -
Glsi05g1343 566 SMART serkin_6 103 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1343 566 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Glsi05g1343 566 MobiDBLite consensus disorder prediction 25 69 - -
Glsi05g1343 566 SUPERFAMILY EF-hand 395 548 IPR011992 -
Glsi05g1343 566 ProSitePatterns EF-hand calcium-binding domain. 528 540 IPR018247 -
Glsi05g1343 566 FunFam CDPK-related kinase 1 96 188 - -
Glsi05g1343 566 Gene3D - 382 473 - -
Glsi05g1343 566 Pfam Protein kinase domain 103 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1343 566 CDD STKc_CAMK 102 362 - -
Glsi05g1343 566 SMART efh_1 489 517 IPR002048 GO:0005509
Glsi05g1343 566 SMART efh_1 447 475 IPR002048 GO:0005509
Glsi05g1343 566 SMART efh_1 410 438 IPR002048 GO:0005509
Glsi05g1343 566 SMART efh_1 519 547 IPR002048 GO:0005509
Glsi05g1343 566 CDD EFh 491 545 IPR002048 GO:0005509
Glsi05g1343 566 Pfam EF-hand domain pair 410 472 IPR002048 GO:0005509
Glsi05g1343 566 Pfam EF-hand domain pair 491 544 IPR002048 GO:0005509
Glsi05g1343 566 Gene3D Phosphorylase Kinase; domain 1 96 188 - -
Glsi05g1343 566 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1343 Glsi-ChrGlsi05 62543590 62547693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1343 1 557 EF-hand Containing Proteins AT2G17890 75.916 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi05g1343 Pkinase 1.2e-69 CL0016