Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1342 ATGGACCAGTGGAAGCCTGAAGATTTGTCCAAGTCTGTAACTGTTGCGGCAGATTTATCACCTTCTTCACTTCAGCCTCAGTCTCAGCTTGTTACTGTCACCTCTAATCGGTTGCAGAACTCGAATACCGAATCCAGGCAGAGACCCGAAGTAGAAGCACAGGATCCAGTTGCTGCAAAAAAATTGCAGAAGGCGGACCGCGAGAAATTGAGGAGAGATCGACTAAATGAGCAATTCCTAGAGTTAGGAAACGCATTAGACCCTGACAGGCCAAAGAATGACAAGGCGACCATCCTTACAGACACAATCCAAATGCTAAAGGATTTAACTGCTGAAGTCAATAGACTAAAAGCTGAGCATGCAGCGCTTTCTGAGGAATCACATGAACTAATGCAAGAGAAGAATGAACTCAGAGAAGAGAAGACATCTTTAAAATCTGATATTGAAAATCTTAATGCCCAGTGTCAACAGAGAGTCAGAATCATGTTCCCATGGACTGCAATTGACCATTCTGTTGTCATGGGTCCGCCTTATTCATATCCAGTTCCTATACCCATCCCTCCTGGTCCAATTTCCATTCACCCATCACTTCAGCCATTTCCCGTCTTTGGAAATCAAAATCCAGGTCCAATTCCTAATCCCTGTTCCACATATATACCGTTTTCGGCTCCAGCAAACCCCCCAGTTGAGCAGCCAATTGGCCAGTATGCTTCCACGTCCCACATTTCAAGCAAACAAGATTCCAGAAGTAAGTCATCAGATAATGAAAGGCCCAGCAATGCTGAAAGATGTGATGAGTCTACTGATGTGGCTACAGAGCTTGAACTTAAGATGCCTGGATCATCATCACGTCAGGATTCCTCCTCTCGAGGAAGGAAGGGCAAGCATTCACTGAGGAAGGAGAGAAATATCAGAGAGGGGAGTGCTTCAAGCAAGCATTCTTCATCTCAAGGACTTCAAGATAGCTCCAACAGCGTAGGTGACATTCCAAAGGCTGATAATTGA 1005 0.4498 MDQWKPEDLSKSVTVAADLSPSSLQPQSQLVTVTSNRLQNSNTESRQRPEVEAQDPVAAKKLQKADREKLRRDRLNEQFLELGNALDPDRPKNDKATILTDTIQMLKDLTAEVNRLKAEHAALSEESHELMQEKNELREEKTSLKSDIENLNAQCQQRVRIMFPWTAIDHSVVMGPPYSYPVPIPIPPGPISIHPSLQPFPVFGNQNPGPIPNPCSTYIPFSAPANPPVEQPIGQYASTSHISSKQDSRSKSSDNERPSNAERCDESTDVATELELKMPGSSSRQDSSSRGRKGKHSLRKERNIREGSASSKHSSSQGLQDSSNSVGDIPKADN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1342 334 MobiDBLite consensus disorder prediction 309 334 - -
Glsi05g1342 334 MobiDBLite consensus disorder prediction 222 334 - -
Glsi05g1342 334 MobiDBLite consensus disorder prediction 15 47 - -
Glsi05g1342 334 CDD bHLH_AtILR3_like 64 138 - -
Glsi05g1342 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 130 IPR036638 GO:0046983
Glsi05g1342 334 MobiDBLite consensus disorder prediction 48 68 - -
Glsi05g1342 334 MobiDBLite consensus disorder prediction 247 272 - -
Glsi05g1342 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 109 IPR011598 GO:0046983
Glsi05g1342 334 PANTHER TRANSCRIPTION FACTOR BHLH121 25 332 IPR044579 GO:0003700|GO:0006879
Glsi05g1342 334 MobiDBLite consensus disorder prediction 1 68 - -
Glsi05g1342 334 MobiDBLite consensus disorder prediction 232 246 - -
Glsi05g1342 334 Pfam Helix-loop-helix DNA-binding domain 61 109 IPR011598 GO:0046983
Glsi05g1342 334 Coils Coil 99 154 - -
Glsi05g1342 334 Gene3D - 57 142 IPR036638 GO:0046983
Glsi05g1342 334 SMART finulus 65 115 IPR011598 GO:0046983
Glsi05g1342 334 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1342 Glsi-ChrGlsi05 62538301 62542315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1342 50 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.078 1.73e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g1342 HLH 1.2e-08 No_clan