Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1340 ATGCTATCCCTATCTCTTCCTGCATCTCTCACCGCCACCAATCTCTCCGGCAAATCCGCCTGTTCTCCGCCGTCGACTCCACCGCCTCGCTTAAGATCCCGGCATATCGTCGCTTCCGCCACCGCCACCGAACCTCGCTCTACTTGGACGGATCAACCAAATTCAAGGCCTTCGTATCTGAGCCCCCGTAGTCTGCCTTCGTGCACATCGCTGTACGAGGTTCTAGGAATTCCCACCGCCGCCTCCAATCAAGAGATTAAGGCGGCGTACAGGCGATTAGCGAGAGTGTGCCATCCGGATGTGGCGGCGATGGATCAGAAAACCTCATCGGCGGACGAATTTATGAAGATTCACGCTGCGTACTCCACTCTATCGGATCCGGAAAAGCGTGCTAACTACGACAGGAGTCTTTTCCGTCGACAACGGCCATTGTCGACGGTGTCCATATATTCCGGGTACGGCGGCCGGAACTGGGAAACGGACCAGTGCTGGTAG 495 0.5636 MLSLSLPASLTATNLSGKSACSPPSTPPPRLRSRHIVASATATEPRSTWTDQPNSRPSYLSPRSLPSCTSLYEVLGIPTAASNQEIKAAYRRLARVCHPDVAAMDQKTSSADEFMKIHAAYSTLSDPEKRANYDRSLFRRQRPLSTVSIYSGYGGRNWETDQCW 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1340 164 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 35 147 - -
Glsi05g1340 164 SMART dnaj_3 69 129 IPR001623 -
Glsi05g1340 164 MobiDBLite consensus disorder prediction 40 63 - -
Glsi05g1340 164 MobiDBLite consensus disorder prediction 14 63 - -
Glsi05g1340 164 SUPERFAMILY Chaperone J-domain 21 133 IPR036869 -
Glsi05g1340 164 PRINTS DnaJ domain signature 72 90 IPR001623 -
Glsi05g1340 164 PRINTS DnaJ domain signature 90 105 IPR001623 -
Glsi05g1340 164 PRINTS DnaJ domain signature 109 129 IPR001623 -
Glsi05g1340 164 CDD DnaJ 72 126 IPR001623 -
Glsi05g1340 164 Pfam DnaJ domain 71 134 IPR001623 -
Glsi05g1340 164 ProSiteProfiles dnaJ domain profile. 70 137 IPR001623 -
Glsi05g1340 164 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Glsi05g1340 164 Gene3D DnaJ domain 60 152 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1340 Glsi-ChrGlsi05 62529920 62530414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1340 61 134 C2H2 Transcription Factor Family AT1G74250 43.590 1.52e-09 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1340 05 62529920 62530414 Glsi05g1340 05 62529920 62530414 ECH