Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1336 ATGCAATATAGATGCAGCCAGCCAACTTCATTATACCAAGCATTACTACTGAATGAAACTTTCTCTGGTTCCACTCTGATGGCAGAACAGAGATCCACCGGTGTGGTACAGTGGTTCCATGATTCTAAAGGTTTTGGCTTTATCAAGCCTGACGATGGAGGAGAAGATCTCTTTGTCCATCAATCTTCTATCAGATCCGAGGGCTATCGTAGCCTTGTAGAAGGCGACCGTGTCGAGTTCTTAATTGCCACTGGTGACAAGGAGAAAACCAAGGCCATTGATGTCACTGGCCCTAATGGAGCTCCTCTACAATCTAAGAAAGACAATTACGGGGGCCGTGGCGATGGTGGGTATGGCTTTGGCGGTGGATGGAGAGGTGGCGATAGGCGCAACGGTGGTGGAGGGGCTGGTGGTGCTGGCTGCTATCAGTGCGGCGATCCTGGCCACTTAGCCAGGGATTGCAGCCGGGGCAACAATGCCGACGGCGCTTCTTGTTTTAAATGTGGTGAAGTTGGGCACTTGGCCAGGGACTGCTCGCGTGGAAACAATGGCGGCGGCGGTAGCGGGTCTTGCTTTAGGTGTGGTGAATATGGGCACATGGCGAGGGATTGCACCAAGGGAAGCAGCGGTGGCGGTGGGGGTGGCAGCGGTGGAGGTTGCTTTAGATGTGGGGAAGTGGGCCACTTGGCCAGGGATTGCAGCAAAGAAAGCGGAAAGTATGGTGGCGGCGGTAGTGCTGGAGGAAATACTTGCTTTAATTGTGGGAAACCTGGGCATTTCGCGAGAGAGTGCCCTGAAGCTTCTGGTGTAGTGGACCCGACAGGCCTTGTTTCTGTTACTAAATCTGCCTTTCTTGCTCCTGTTCTTTTATGTTGTAGGGGGAGGGGAGATTGTTGTTTACAATTATACTGTGCAGGATCGCATTCAGCAACATTCACAATCGTAAACAAGTGCAGCTACACAGTTTGGCCAGGCATTTTGTCGAGCGCTGGAACTGCACAGCTTTCCACCACTGGTTTCGCTCTCCAACCAGGCGAGTCCAACGCTCTCTCCGCCCCCACAGCCTGGTCCGGCCGCTTATGGGGTCGAACCCTTTGCTCCCAGGACCCCACCGGAAAGTTCTCCTGCGTCACCGGTGATTGCGGCTCCTCTACCGTGGAATGCGCGGGTGGCGGTGCCGCCCCACCTGCCACGCTCGCAGAGTTCACCTTAAACGGTGCCGGAGGACTCGACTTCTACGACGTAAGCCTCGTCGACGGATACAACCTTCCCATGACGGTGGAGCCTCAGGGAGGAACCGGAGCCGGGAACTGCACGACGACGGGTTGCGTAGTGGATTTGAACGGGGCTTGCCCCGTGGAGTTGAAGGTGACGACGGGGGGAAATGGAGGAGAGGGCGTGGCTTGTAAGAGCGCGTGTGAAGCATTCGGGGATCCACAGTATTGCTGCAGTGGCGCCTACGCGACTCCTGACACATGCAAGCCCAGCTCTTACTCGCAATTCTTCAAAAGTGCCTGCCCACGCGCTTACAGCTACGCTTATGACGATGGCACCAGCACCTTCACCTGTGCCTCTGCCAATTACCTCGTCACTTTCTGCCCCTCTTCCACCACAAGTTTGATAAAGTCGGGGAATGAGAAATACCCAATGGCAGCGGCCATCTCAAGAGCGCATGGGAGGCGGCCAGCCAGGTTCATTGTGGCTGTGTTAGTTGGGGTTTTGGGTTTACGGCACCTCAATTAG 1743 0.5513 MQYRCSQPTSLYQALLLNETFSGSTLMAEQRSTGVVQWFHDSKGFGFIKPDDGGEDLFVHQSSIRSEGYRSLVEGDRVEFLIATGDKEKTKAIDVTGPNGAPLQSKKDNYGGRGDGGYGFGGGWRGGDRRNGGGGAGGAGCYQCGDPGHLARDCSRGNNADGASCFKCGEVGHLARDCSRGNNGGGGSGSCFRCGEYGHMARDCTKGSSGGGGGGSGGGCFRCGEVGHLARDCSKESGKYGGGGSAGGNTCFNCGKPGHFARECPEASGVVDPTGLVSVTKSAFLAPVLLCCRGRGDCCLQLYCAGSHSATFTIVNKCSYTVWPGILSSAGTAQLSTTGFALQPGESNALSAPTAWSGRLWGRTLCSQDPTGKFSCVTGDCGSSTVECAGGGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMTVEPQGGTGAGNCTTTGCVVDLNGACPVELKVTTGGNGGEGVACKSACEAFGDPQYCCSGAYATPDTCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCASANYLVTFCPSSTTSLIKSGNEKYPMAAAISRAHGRRPARFIVAVLVGVLGLRHLN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1336 580 SUPERFAMILY Retrovirus zinc finger-like domains 131 181 IPR036875 GO:0003676|GO:0008270
Glsi05g1336 580 FunFam THAUMATIN-LIKE PROTEIN 1 310 534 - -
Glsi05g1336 580 PANTHER OS03G0233200 PROTEIN 307 534 IPR001938 -
Glsi05g1336 580 Gene3D - 125 159 - -
Glsi05g1336 580 PRINTS Cold shock protein signature 34 49 IPR002059 GO:0003676
Glsi05g1336 580 PRINTS Cold shock protein signature 55 64 IPR002059 GO:0003676
Glsi05g1336 580 PRINTS Cold shock protein signature 70 88 IPR002059 GO:0003676
Glsi05g1336 580 ProSiteProfiles Thaumatin family profile. 309 534 IPR001938 -
Glsi05g1336 580 ProSiteProfiles Zinc finger CCHC-type profile. 141 154 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 SUPERFAMILY Nucleic acid-binding proteins 27 97 IPR012340 -
Glsi05g1336 580 ProSiteProfiles Zinc finger CCHC-type profile. 165 178 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 CDD TLP-PA 311 533 - -
Glsi05g1336 580 ProSiteProfiles Zinc finger CCHC-type profile. 191 206 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 Pfam Thaumatin family 316 534 IPR001938 -
Glsi05g1336 580 SMART c2hcfinal6 190 206 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 SMART c2hcfinal6 219 235 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 SMART c2hcfinal6 250 266 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 SUPERFAMILY Retrovirus zinc finger-like domains 182 236 IPR036875 GO:0003676|GO:0008270
Glsi05g1336 580 SUPERFAMILY Retrovirus zinc finger-like domains 238 270 IPR036875 GO:0003676|GO:0008270
Glsi05g1336 580 SMART csp_8 33 98 IPR011129 GO:0003676
Glsi05g1336 580 ProSitePatterns Cold-shock (CSD) domain signature. 45 64 IPR019844 -
Glsi05g1336 580 SMART tha2 312 534 IPR001938 -
Glsi05g1336 580 Gene3D - 215 241 - -
Glsi05g1336 580 Gene3D - 187 213 - -
Glsi05g1336 580 Gene3D - 160 186 - -
Glsi05g1336 580 Gene3D - 242 272 - -
Glsi05g1336 580 CDD CSP_CDS 33 97 IPR002059 GO:0003676
Glsi05g1336 580 Gene3D - 26 109 IPR012340 -
Glsi05g1336 580 ProSiteProfiles Zinc finger CCHC-type profile. 251 266 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 ProSiteProfiles Cold-shock (CSD) domain profile. 31 97 IPR002059 GO:0003676
Glsi05g1336 580 Pfam 'Cold-shock' DNA-binding domain 33 97 IPR002059 GO:0003676
Glsi05g1336 580 Gene3D Thaumatin 310 534 IPR037176 -
Glsi05g1336 580 ProSiteProfiles Zinc finger CCHC-type profile. 220 235 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 Pfam Zinc knuckle 219 235 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 Pfam Zinc knuckle 140 155 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 Pfam Zinc knuckle 249 266 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 Pfam Zinc knuckle 190 206 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 Pfam Zinc knuckle 165 179 IPR001878 GO:0003676|GO:0008270
Glsi05g1336 580 SUPERFAMILY Osmotin, thaumatin-like protein 310 535 IPR037176 -
Glsi05g1336 580 PRINTS Pathogenesis-related protein signature 411 427 IPR001938 -
Glsi05g1336 580 PRINTS Pathogenesis-related protein signature 311 323 IPR001938 -
Glsi05g1336 580 PRINTS Pathogenesis-related protein signature 359 370 IPR001938 -
Glsi05g1336 580 PRINTS Pathogenesis-related protein signature 524 533 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1336 Glsi-ChrGlsi05 62499542 62506724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1336 301 546 Receptor kinase-like Gene Family AT5G38280 51.012 5.91e-85 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Glsi05g1336 Thaumatin 2.5e-84 CL0293