Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1329 ATGGCAGAAGATAGAGACAAAATCTCCTCTGAAAGTTCTGTATATTCACTAGGTTCAACCTCACCAATGGGTAGCAAGTGCAGATTTTTGTTTGAAAGATTATGGGGTTTTTCAACTTCTTGGAAGAAAAGCACCAAACCACATGGTCGAAGAATCTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCCAGTACTCAGTGCCTCTCATCGTACTACAGTGTGTTTGTGGTTCGCCTAGCAATCATGGTCATGCTAGCCATCTTGATTGGGCTGCTCACTATACTAACATGGCATTTCACAAAGATTTATACAGCAAAATCACTTGATAGCTTAGCATATGGCCTTCGTTATGAATTACTACAACGTCCCATCTTACGGATGTGGAATATTTTGAATTCTACTTCTGAAATTACAACAGCTCAGGTTAAGCTGTCTGAGTATGTAATCAGACGGTACAGCAACCCCGCCACTCAAGCACAACAAGTTGAGCAGCTGTACGAAGCAATGAGGGCTTCAACATGGGCACTGTTTTCTAGTCGCAAGGCTCTCAATTCAATAACTATCAATTACAGGAACGGCTTCGTCCAGGCATTCCATAGAGATATTAAGGGTAACAATACATTTTACATCTACTCTGATCTTGCAAATTACTCCATAGGCGCCGGGGGCTCCAATGACATCAATTCACTCTCAACAAATCAAGCTTGGAATGATGAATCCATTCATGGTAACTATTCTGCAATTTGGTATCGTGAACCACTTGACCCTGTCAGTGGTGAGAAGATTGGAAAAGCTAAGCAAATTGCACCAGAAGACTTGATTAATATTGCCGGCTTTTCTCAAGTATCTGATGGCGTAGCTTCATGGCACGTTGCTGTGAGCAAGTTTACAGATTCACCACTGCTTTCAGCTGCACTGCCAGTTTGGGACTCTTCTAATAAGAGCATTGTGGCTGTTGTGGGTGTCACAACTGCACTTTTTAGTGTTGGCCAGTTAATGAAAGAACTGGTTGAGTTTCATAGTGGTTATATCTATTTGACCTCCCAAGAGGGTTACTTACTTGCCACTTCCACAAATGTTCCACTGCTAACAAATTCAACAAAGCCACTCAAGCTTAAGATGGCTGTTGATTGTGAAGATAATATAATACGACTGGGAGCTGAGTGGTTAAATAGAACGTATGGGAACAATTTCCCTGCAAGTCATGAGGTTCATGTAGAGAATGTTAAGCTAGGCCACCAGCAATATTACATTGACTCATTCTTTCTAAATTTGAAGAGGCTTCCCCTGGTGGGTGTTATCATTATACCGAGAAAGTATATCATGGGGAAGGTAGATGAAAGAGCCTTCAAAACGCTGGTTATTCTGATATCGGCATCGTTGTGTATTCTAGTCATTGGATGTGTTTGCATTTTAATACTGACAAATGGGGTATCGAAGGAAATGAAACTAAGAGCAGAACTAATAAGTCAATTAGAAGCAAGAAGGAAGGCAGAGGCATCGAGCAACTATAAAAGTCAGTTTCTTGCAAACATGAGTCACGAACTGAGGACACCTATGGCAGCAGTGATTGGGTTGCTTGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATGCAACAGTTACTCAGATAAGAAAATGCTCAACTGCCTTACTTCGTCTTCTTAACAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAATTGGTGTTAGAAGATGCAGAATTTGACTTGGGACGGGAACTTGAAGGCCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTGTCTGATGATATGCCAAAGATAGTTCAGGGAGATTCTGCTAGGGTAGTTCAAATATTTGCAAATTTGATCAACAATTCGATCAAGTTTACTCCATCGGGTCACGTTATTCTCCGAGGGTGGTGCGAGAACCCAAACTCTTGCAGTGATAGTGCAAATTTTCCTCTTAATCAGAAGAAGTCGCGTACTGCACAAAAGGCCAGAATGAAGCAACATGAAAGCCATGCAAAGAAGACATCCAAGAAAGATAATAAAATGATTCTTTGGTTTGAAGTAGACGACACAGGCAGTGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCATCAACTACCAGACTGCATGGAGGCACTGGTCTTGGACTTTGCATTGTGAGAACCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACTCTGATGCGATTATACCTACTTCTCAGTACACCCATGGATGCCACAGAACAGCATTGTCGAGGAGATTATTCAGAGAATGGCTTGGTGGTATTGCTTGCACTACATGGCAACATGGGTAGATTAATCACATCTAAGTGGTTGGAGAAAAATGGGGTGTGCACTCTGGAGGCATCTGAATGGAATGGACTGACACAAATTCTGAGGCAACTCTTTCATGCAAGAAGTTCAGTCCATAAGAATGGCTTTGATGCACATTATCCAATAAATGAGAGTTTGAAGTCTAAATTACTCAATATGGAAGAAATGAAGAACCCAGCGTTTGTCATTGTTGTTGACATAGGGCTACTTGACTTGAGCACAGATATATGGAAGGAACAGATCAACTTCCTTCGCAAGTACAATGGGAGAGCAAAGTTCGCATGGGTGCTAAATCACGACACCTCCAATACCATAAAGATGGAGCTTCGCAGGAAGGGCCATATATGGATGGTCAACAAACCCCTCTACAAAGCAAAAATGATTCACATTTTGGAAGCCGTCCTAAGGGAGAGAAATCTTGAGCTACAAAAGAAAAATGTAAGTGCTTCAAGGACCACAATGAAAGATGGTGATCTGCACGAGTTTCTTGAGATTGATTCCACTCATTTTGACGCTGCTAGTTCTGATGATTCTGACATATCTGAAATGTGTGTTTCTAATCCTATTAGTGCCAGTGGAGATAAACAAAGGGAAAAGATATTAAAATCCCATCCATCATCACAATACCAGATAAACAATTGTTTAGTTGGATTAACCAATGGATATTCAGAAGATAACATTTCAAGGAAAGAAGAGTCATGTCAGAGCAGTCCAAACTCCCATGATGTCCTTGAAAATGAAGAACCAAAAATATCATCCTCTCAACAAGCATCCTTTCCAACTGAAGTTCAAGGCAGGGATTCTGAATATGGGGAAACACATAAGGTCACTTGCTCAAATAAAGCCGGGAATGGAAAGAAATCTCTCGAAGGCCTAAGGATATTGCTGGCAGAAGACACTCCAGTACTTCAAAGGGTTGCAACCATAATGCTGGAAAAAATGGGAGCCACAGTTGTTGCAGTAGGTGATGGACAACAGACAGTGGATGCTCTGAATTGCATGCTCGGTGCTGGAGATAGTAGAAGAGAGTCACTGCTGAAAGATAGAAGCACAAGATCTCAAACAGAAATTGTCAGTTGTCCTCCATATGACTTAATACTAATGGATTGTCAGATGCCAAAGATGGATGGTTATGAAGCAACAAAAGCAATCAGGAAATCAGAAGCAGGAACTGGCTTGCACATTCCCATTGTTGCTCTTACAGCCCATGCAATGTCATCTGATGAAGCTAAATGCCTGGAGGTAGGCATGGATGCTTATTTAACAAAGCCAATTGACTACAAGCTGATGGTGTCCACCATTCTTTCACTTACTAAAAGACCTTCCTGA 3750 0.4128 MAEDRDKISSESSVYSLGSTSPMGSKCRFLFERLWGFSTSWKKSTKPHGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLDSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSEYVIRRYSNPATQAQQVEQLYEAMRASTWALFSSRKALNSITINYRNGFVQAFHRDIKGNNTFYIYSDLANYSIGAGGSNDINSLSTNQAWNDESIHGNYSAIWYREPLDPVSGEKIGKAKQIAPEDLINIAGFSQVSDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALFSVGQLMKELVEFHSGYIYLTSQEGYLLATSTNVPLLTNSTKPLKLKMAVDCEDNIIRLGAEWLNRTYGNNFPASHEVHVENVKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGKVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKIVQGDSARVVQIFANLINNSIKFTPSGHVILRGWCENPNSCSDSANFPLNQKKSRTAQKARMKQHESHAKKTSKKDNKMILWFEVDDTGSGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLLLSTPMDATEQHCRGDYSENGLVVLLALHGNMGRLITSKWLEKNGVCTLEASEWNGLTQILRQLFHARSSVHKNGFDAHYPINESLKSKLLNMEEMKNPAFVIVVDIGLLDLSTDIWKEQINFLRKYNGRAKFAWVLNHDTSNTIKMELRRKGHIWMVNKPLYKAKMIHILEAVLRERNLELQKKNVSASRTTMKDGDLHEFLEIDSTHFDAASSDDSDISEMCVSNPISASGDKQREKILKSHPSSQYQINNCLVGLTNGYSEDNISRKEESCQSSPNSHDVLENEEPKISSSQQASFPTEVQGRDSEYGETHKVTCSNKAGNGKKSLEGLRILLAEDTPVLQRVATIMLEKMGATVVAVGDGQQTVDALNCMLGAGDSRRESLLKDRSTRSQTEIVSCPPYDLILMDCQMPKMDGYEATKAIRKSEAGTGLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTKRPS 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1329 1249 SMART HKATPase_4 619 771 IPR003594 -
Glsi05g1329 1249 PANTHER TWO-COMPONENT HISTIDINE KINASE 62 776 - -
Glsi05g1329 1249 CDD HisKA 507 568 IPR003661 GO:0000155|GO:0007165
Glsi05g1329 1249 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 767 IPR036890 -
Glsi05g1329 1249 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 769 IPR003594 -
Glsi05g1329 1249 SMART REC_2 1099 1241 IPR001789 GO:0000160
Glsi05g1329 1249 SMART HisKA_10 506 572 IPR003661 GO:0000155|GO:0007165
Glsi05g1329 1249 CDD REC_hyHK_CKI1_RcsC-like 1101 1241 - -
Glsi05g1329 1249 ProSiteProfiles Response regulatory domain profile. 1100 1245 IPR001789 GO:0000160
Glsi05g1329 1249 SUPERFAMILY CheY-like 1097 1246 IPR011006 -
Glsi05g1329 1249 FunFam Histidine kinase 1-like protein 494 573 - -
Glsi05g1329 1249 Gene3D - 494 573 - -
Glsi05g1329 1249 MobiDBLite consensus disorder prediction 1034 1089 - -
Glsi05g1329 1249 MobiDBLite consensus disorder prediction 1 22 - -
Glsi05g1329 1249 MobiDBLite consensus disorder prediction 1056 1070 - -
Glsi05g1329 1249 Pfam Response regulator receiver domain 1167 1239 IPR001789 GO:0000160
Glsi05g1329 1249 Gene3D - 574 772 IPR036890 -
Glsi05g1329 1249 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155|GO:0007165
Glsi05g1329 1249 PRINTS Bacterial sensor protein C-terminal signature 731 749 IPR004358 GO:0016310|GO:0016772
Glsi05g1329 1249 PRINTS Bacterial sensor protein C-terminal signature 696 710 IPR004358 GO:0016310|GO:0016772
Glsi05g1329 1249 PRINTS Bacterial sensor protein C-terminal signature 714 724 IPR004358 GO:0016310|GO:0016772
Glsi05g1329 1249 ProSiteProfiles Histidine kinase domain profile. 513 771 IPR005467 -
Glsi05g1329 1249 Gene3D - 1078 1246 - -
Glsi05g1329 1249 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 573 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1329 Glsi-ChrGlsi05 62427950 62435276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1329 21 1246 Histidine Kinase Gene Family AT2G17820 65.565 0.0 1602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi05g1329 HATPase_c 1e-21 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1329 05 62427950 62435276 Glsi09g1952 09 23591801 23598744 CCT
Glsi05g1329 05 62427950 62435276 Glsi05g1329 05 62427950 62435276 ECH