Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1299 ATGATTGATGGTCACCGCCGTTTGGTGGCAGCTTCACCACCAGTTCCATTAGCAAACTCACCTTCTAAAAATGGGAAACAACCTACACTTGGTGTGTTGGTGGGATTCGTCTCAGGCATTTTAACAGTAATGGCAGTGGCATTGTTATACTGCCTCTTCAGGAGAAAGATTATTCCACTTTTTAAGCAGCGTAGGAGTTTAAAAGGTACAGAAGAAAAAAGCTTGAAATATGATGAGATATCGTTAAGGCGTTTTGATTTGGAGGAACTAGAGAAGGCTACCAATAATTTTAGCCAAGATTTTTTACTTGGTTCTGGTGCATTTGGAACGGTCTACAAGGGAACCTTTGACGTAGAAGGAACATTAGCCATTAAGAGAGCTCATGGAGAATCATTCTTAAGTGTTGAAGAGTTCAGAAATGAAGTGAGGCTCATCTCAAAAGTAAAGCACAGGAATCTTGTTGGTCTGGTGGGATATTGTGAAGAACCTGGAGATGGGGCTAAAATGCTGGTCTATGAATATGTGCCTAATGGTTCTCTGCTCGAGTACATGATGGGGAAAAGAGGGAGGAGCTTAACTTGGAGGGAAAGAGTAAACATAGCAATCGGAGCAGCTAAAGGCATAGCTTATTTGCATGAAGGGGTGAAGCCAAGCATAATACATCGTGACATTAAGCCAAGCAACATCCTTGTAGGGGAAGGGTTTGAGGCCAAGGTTTCAGATTTTGGGTTGGTAAAATCAGGGCCAATGGAGGATCAGTCCCATGTCAGTAGCCAAGTCAAAGGAACACCAGGATACCTTGATCCTACCTATTGTTCAACCTTCCATTTGACCACATTCAGTGACGTTTATAGCTTCGGTATCATACTTCTGCAACTTGTCTCTGCTAGACCAGTGGTTGATACAGCAGAAAACCAAAGTAATTATCATATTATTGATTGGGCAAGGACTAGCCTAGAGAAGGGTAAGATTGAAGAAATTTTAGATGCAAATCTACTATCTGAGTCCTGCAATATGAAAGTTATGCTGAAGATGGGGCAACTTGCTCTCAAATGTGGGACTCAACTACCAAAACATCGTCCTACAATGACCCAGGTGTGTCAAGAGCTAGAAGAAGCTCTCTATTCTGCTGATAATTTTGTTGGCAAGCAGCCTTCAAAGGGTTTCCCCAAATCAACTGGCTCCTCTCAGGAATCGTCAGAATCAGAGCCTCTCAGATTAGTAGAGAACTACGATTCTTCCCAGAGCTTTGTGAGCATAGATGGTGTTGGGTTTCAAAAATTCCATATTGATATGGATAGCTTCTCCTTTCAGAGCGAAATCTTAAGGTGCCTAGAAAATAATAGTATTGACTTTGAGAAGACAATTTGA 1371 0.4179 MIDGHRRLVAASPPVPLANSPSKNGKQPTLGVLVGFVSGILTVMAVALLYCLFRRKIIPLFKQRRSLKGTEEKSLKYDEISLRRFDLEELEKATNNFSQDFLLGSGAFGTVYKGTFDVEGTLAIKRAHGESFLSVEEFRNEVRLISKVKHRNLVGLVGYCEEPGDGAKMLVYEYVPNGSLLEYMMGKRGRSLTWRERVNIAIGAAKGIAYLHEGVKPSIIHRDIKPSNILVGEGFEAKVSDFGLVKSGPMEDQSHVSSQVKGTPGYLDPTYCSTFHLTTFSDVYSFGIILLQLVSARPVVDTAENQSNYHIIDWARTSLEKGKIEEILDANLLSESCNMKVMLKMGQLALKCGTQLPKHRPTMTQVCQELEEALYSADNFVGKQPSKGFPKSTGSSQESSESEPLRLVENYDSSQSFVSIDGVGFQKFHIDMDSFSFQSEILRCLENNSIDFEKTI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1299 456 FunFam Putative LRR receptor-like serine/threonine-protein kinase 63 174 - -
Glsi05g1299 456 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 20 392 - -
Glsi05g1299 456 Gene3D Phosphorylase Kinase; domain 1 60 174 - -
Glsi05g1299 456 ProSiteProfiles Protein kinase domain profile. 97 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1299 456 MobiDBLite consensus disorder prediction 385 405 - -
Glsi05g1299 456 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 175 381 - -
Glsi05g1299 456 Pfam Protein tyrosine and serine/threonine kinase 102 370 IPR001245 GO:0004672|GO:0006468
Glsi05g1299 456 CDD STKc_IRAK 103 372 - -
Glsi05g1299 456 MobiDBLite consensus disorder prediction 386 405 - -
Glsi05g1299 456 SMART serkin_6 97 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1299 456 SUPERFAMILY Protein kinase-like (PK-like) 77 371 IPR011009 -
Glsi05g1299 456 Gene3D Transferase(Phosphotransferase) domain 1 175 385 - -
Glsi05g1299 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Glsi05g1299 456 ProSitePatterns Protein kinases ATP-binding region signature. 103 125 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1299 Glsi-ChrGlsi05 62267006 62269275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1299 26 378 Receptor kinase-like Gene Family AT1G51850 40.166 1.61e-78 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Glsi05g1299 PK_Tyr_Ser-Thr 9e-41 CL0016