Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1298 ATGGAGTTTGTTGCAAATCCATTTCCTTTGCCTTCTTCCTTGTTGGGTTCCTTTGGGAATTTCGTTGAAAGGGTAAAACACGTTAGCAGTCTGGCGGTTTCTGTCATAATCGGGAACATCTTTTCTGCGATCTTGACTTTCTGCTTTGCATTAGTGGGCACTTTGTTGGGAGCCATGACTGGAGCATTGATAGGCCAAGAGACTGAGAGTGGCTTCATTAGAGGGGCTGCAGTTGGTGCCATATCTGGAGCTGTTTTCTCTATTGAAGTATTTGAATCTTCTCTTGTTCTTTGGCAATCTGACGAATCTGGGATTGGGTGCCTCTTATATTTGATTGATGTTATTGCTAGCCTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCTGCTATGTTAAGTGCAGTCCAAAGTCAGATGGGTGCTGTTGAAGCAAGCTTTGACGAGGTTCAAAACATCTTTGACACTGGTGGTTGCAAAGGTTTAACAGGAGATTCGGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATTTTGATGCTTCGGGTGAAAGAGTTTCTTGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGAGAGACAGTTAGAAGCTTGCCCCATTGCCATCACATGTTCCACCTACCTTGCATAGATAAGTGGCTCTTCAGACACGGTTCTTGCCCACTATGCAGAAGGGATCTGTAA 708 0.4449 MEFVANPFPLPSSLLGSFGNFVERVKHVSSLAVSVIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEASFDEVQNIFDTGGCKGLTGDSVEKIPKITITSDNNFDASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1298 235 Pfam Ring finger domain 189 232 IPR001841 -
Glsi05g1298 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Glsi05g1298 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Glsi05g1298 235 SMART ring_2 190 231 IPR001841 -
Glsi05g1298 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Glsi05g1298 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Glsi05g1298 235 SUPERFAMILY RING/U-box 189 235 - -
Glsi05g1298 235 CDD RING-H2_NIPL1-like 189 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1298 Glsi-ChrGlsi05 62260631 62262119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1298 22 235 C3H Transcription Factor Family AT5G66070 78.972 1.28e-119 338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1298 05 62260631 62262119 Glsi09g0686 09 4734639 4740795 CCT