Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1283 ATGGGCGTATCGCAGAAATGGTTGAAATTTGTTCGGAGAAGGTTCCGGGGCTCATCCAATAGAGATATCATAATCCCTCGTACAAGCACCAACACAAATGGCTCGAGTCAAAGTGAAGAAGCTATTCTTAGGAAAAGCACATCTGATGACCTTGGTTTGGCAGTCTTCAGCAAGGAAGATGTTGCGGCAATTAAGATCCAAGCTTGTTTCAGGGGTCATCTGGCAAGAAGGGCATATCGAGCACTTAAAAGCTTGGTGAAGCTGCAAGCATTGGTTCGTGGGGTGTGCGTAAGGAGACAAACGCGGATTGCGCTGCACTGTATGCACGCACTTGTTCGTTTACAAGTCAGGGTTCGTGCACGGCAGCTTCTTGGCAGGTGTCATCCTGATTAA 393 0.4784 MGVSQKWLKFVRRRFRGSSNRDIIIPRTSTNTNGSSQSEEAILRKSTSDDLGLAVFSKEDVAAIKIQACFRGHLARRAYRALKSLVKLQALVRGVCVRRQTRIALHCMHALVRLQVRVRARQLLGRCHPD 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1283 130 ProSiteProfiles IQ motif profile. 83 110 IPR000048 GO:0005515
Glsi05g1283 130 Pfam IQ calmodulin-binding motif 62 80 IPR000048 GO:0005515
Glsi05g1283 130 Gene3D - 56 108 - -
Glsi05g1283 130 ProSiteProfiles IQ motif profile. 59 87 IPR000048 GO:0005515
Glsi05g1283 130 SMART iq_5 58 80 IPR000048 GO:0005515
Glsi05g1283 130 SMART iq_5 81 102 IPR000048 GO:0005515
Glsi05g1283 130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 103 IPR027417 -
Glsi05g1283 130 PANTHER IQ-DOMAIN 5-RELATED 7 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1283 Glsi-ChrGlsi05 62174244 62174706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1283 36 125 IQD Protein Family AT3G51380 67.778 3.35e-35 115