Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1250 ATGGGAGGTGATAGTGCTGTTGATGATACGACCGCCACCCAGTCCAAGGGCAGTGATGGAGTAAATCTCAACATTCGATGCTCCAATGGTTCGAAATTCTCGGTTCAGATAAGCCTCGAATCCCTTGTCGGATTATTCAAGGAGCTTGTCGCTCGGAATTGCGATATCCCTGCCGATCAACAGCGGCTGATTTATAAGGGTCGGATCTTAAAGGATGATCAAACCTTGCGAAGCTACGGTTTGGAGGCAGATCACACTATCCATTTGGTTCGTGGCTTTGCCCCTGGTGTTACAGCTAATACAACTGGTGGGACTAATAACAGTGGTACAAATACCACCACAAATAATGCAAGAGGTGCTACTAATGAAGGTGGGGGCTTAGGTGGGTCGGGTTTTGGAGATTCTCTGTTTCCGGGACTAAGTATCAGTGGGCTTGGGGGAAGTGGCACCAATGGCTTATTTGGAGCAGGCCTTCCAGATCTCGAACAAATGCAGCAACCATTTATGTCTAATCCCAATATAATGAGAGAAATGATGAACACACCTGCCATACAGAATCTAATAAATAATCCTGAGATAATGCGGAGTCTTATAATGAGTAACCCACAATTGCAGGAGCTCATGGATCGAAATCCTGAGTTAGCACACGTGCTCAATGATCCTGCCACTCTACGCCAGACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAGATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGTATGTATGAAAATGTTCAAGAGCCATTCCTAGATGCCACAACAATGGCTGGTAATACAGGAAACAATAACTCTAACCCATTTGCTGCACTTTTGGGAACTCAAGGTGGACAACCCAGGGATCGATCAGCTAATCCATCAACTACTAATGCTGAAGCAACTGCTGGTTCCCCCTCCCCTAATACTAACCCACTTCCTAATCCTTGGTCCTCTACTGCAACTGGAGGTGCCCAAAATAACACTGCAAGGTCAACTGCTGGTGGGGATGCTAGGCAGCAGGCACCTGCTGGCTTAGGAGGTCTTGGTCTGCAGGATTATCAAGGCATGCTGGGTGCTATGCCTGATCCCACTTTATTGAGCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATGCTTTCCAACCCACAGGCTATGAACCAGATCCTTGGTGTCAATCCTGAGCAGCGTGGCGTACCAGACCTAAATTCTCATCTTAGAGACGTGATGCAAAACCCTGAGTTCCTTCGCCTGCTTTCTTCACCTGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAACTCTTCTTTCTCAGCTTGGTCGTGCACCATCAACACAGGAATCAGGTCAAACTGGCGGAGGCACTGGATCAATGAACAACGCAGGGCTGGAGATGTTGATGAATATGTTTGGGGGACTTGGGGCTGGTAGTCTAGCTGTTCCAAACAGATCGAATGAGCCACCAGAGCAATTGTATGCCACCCAACTGACACAGCTTCAAGAGATGGGCTTCTTTGATACGCAAGAGAACATCCGAGCTCTTATTGCTACTTCGGGGAATGTTCATGCAGCAGTTGAACGGCTTCTGGGGAACACTGGTCAGTAG 1659 0.4714 MGGDSAVDDTTATQSKGSDGVNLNIRCSNGSKFSVQISLESLVGLFKELVARNCDIPADQQRLIYKGRILKDDQTLRSYGLEADHTIHLVRGFAPGVTANTTGGTNNSGTNTTTNNARGATNEGGGLGGSGFGDSLFPGLSISGLGGSGTNGLFGAGLPDLEQMQQPFMSNPNIMREMMNTPAIQNLINNPEIMRSLIMSNPQLQELMDRNPELAHVLNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGNNNSNPFAALLGTQGGQPRDRSANPSTTNAEATAGSPSPNTNPLPNPWSSTATGGAQNNTARSTAGGDARQQAPAGLGGLGLQDYQGMLGAMPDPTLLSQLMQNPAISQMMQSMLSNPQAMNQILGVNPEQRGVPDLNSHLRDVMQNPEFLRLLSSPETMQQLLSFQQTLLSQLGRAPSTQESGQTGGGTGSMNNAGLEMLMNMFGGLGAGSLAVPNRSNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1250 552 CDD UBA_PLICs 510 548 - -
Glsi05g1250 552 MobiDBLite consensus disorder prediction 276 350 - -
Glsi05g1250 552 Gene3D - 8 103 - -
Glsi05g1250 552 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Glsi05g1250 552 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 504 549 IPR015940 -
Glsi05g1250 552 SMART uba_6 510 548 IPR015940 -
Glsi05g1250 552 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Glsi05g1250 552 SUPERFAMILY UBA-like 506 548 IPR009060 GO:0005515
Glsi05g1250 552 PANTHER UBIQUILIN 16 547 IPR015496 -
Glsi05g1250 552 SMART CBM 420 446 IPR006636 -
Glsi05g1250 552 SMART CBM 151 188 IPR006636 -
Glsi05g1250 552 SMART CBM 201 240 IPR006636 -
Glsi05g1250 552 SMART CBM 377 418 IPR006636 -
Glsi05g1250 552 MobiDBLite consensus disorder prediction 1 21 - -
Glsi05g1250 552 MobiDBLite consensus disorder prediction 276 361 - -
Glsi05g1250 552 MobiDBLite consensus disorder prediction 457 478 - -
Glsi05g1250 552 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Glsi05g1250 552 MobiDBLite consensus disorder prediction 7 21 - -
Glsi05g1250 552 Gene3D - 492 552 - -
Glsi05g1250 552 FunFam Ubiquitin domain-containing protein DSK2b 18 106 - -
Glsi05g1250 552 SMART ubq_7 21 92 IPR000626 GO:0005515
Glsi05g1250 552 CDD Ubl_Dsk2p_like 21 93 - -
Glsi05g1250 552 SUPERFAMILY Ubiquitin-like 12 109 IPR029071 -
Glsi05g1250 552 Gene3D - 196 254 - -
Glsi05g1250 552 FunFam Ubiquitin domain-containing protein DSK2b 493 551 - -
Glsi05g1250 552 Pfam UBA/TS-N domain 510 546 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1250 Glsi-ChrGlsi05 61957609 61962876 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1250 25 97 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.767 3.53e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1250 05 61957609 61962876 Glsi09g0711 09 4891273 4897909 CCT
Glsi05g1250 05 61957609 61962876 Glsi05g1250 05 61957609 61962876 ECH